| [c52e08] | 1 | ### Subgraph dissection with specific boundary conditions | 
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|  | 2 |  | 
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|  | 3 | AT_SETUP([Graph - subgraph dissection with Wrap BC]) | 
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|  | 4 | AT_KEYWORDS([graph subgraph-dissection set-boundary-conditions]) | 
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|  | 5 |  | 
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|  | 6 | file=water.xyz | 
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|  | 7 | AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Graph/SubgraphDissection-BoundaryConditions/pre/$file $file], 0) | 
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|  | 8 | AT_CHECK([chmod u+w $file], 0, [ignore], [ignore]) | 
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| [97f9b9] | 9 | AT_CHECK([../../molecuilder -i $file -B "5,0,5,0,0,5" --set-boundary-conditions Wrap Wrap Wrap -v 3 -I], 0, [stdout], [stderr]) | 
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| [c52e08] | 10 | AT_CHECK([fgrep "I scanned 1 molecules." stdout], 0, [ignore], [ignore]) | 
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|  | 11 | file=water-bounced.xyz | 
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|  | 12 | AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Graph/SubgraphDissection-BoundaryConditions/pre/$file $file], 0) | 
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|  | 13 | AT_CHECK([chmod u+w $file], 0, [ignore], [ignore]) | 
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| [97f9b9] | 14 | AT_CHECK([../../molecuilder -i $file -B "5,0,5,0,0,5" --set-boundary-conditions Wrap Wrap Wrap -v 3 -I], 0, [stdout], [stderr]) | 
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| [c52e08] | 15 | AT_CHECK([fgrep "I scanned 1 molecules." stdout], 0, [ignore], [ignore]) | 
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|  | 16 | file=water-wrapped.xyz | 
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|  | 17 | AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Graph/SubgraphDissection-BoundaryConditions/pre/$file $file], 0) | 
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|  | 18 | AT_CHECK([chmod u+w $file], 0, [ignore], [ignore]) | 
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| [97f9b9] | 19 | AT_CHECK([../../molecuilder -i $file -B "5,0,5,0,0,5" --set-boundary-conditions Wrap Wrap Wrap -v 3 -I], 0, [stdout], [stderr]) | 
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| [c52e08] | 20 | AT_CHECK([fgrep "I scanned 1 molecules." stdout], 0, [ignore], [ignore]) | 
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|  | 21 |  | 
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|  | 22 | AT_CLEANUP | 
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|  | 23 |  | 
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|  | 24 | AT_SETUP([Graph - subgraph dissection with Bounce BC]) | 
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|  | 25 | AT_KEYWORDS([graph subgraph-dissection set-boundary-conditions]) | 
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|  | 26 |  | 
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|  | 27 | file=water.xyz | 
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|  | 28 | AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Graph/SubgraphDissection-BoundaryConditions/pre/$file $file], 0) | 
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|  | 29 | AT_CHECK([chmod u+w $file], 0, [ignore], [ignore]) | 
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| [97f9b9] | 30 | AT_CHECK([../../molecuilder -i $file -B "5,0,5,0,0,5" --set-boundary-conditions Bounce Bounce Bounce -v 3 -I], 0, [stdout], [stderr]) | 
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| [c52e08] | 31 | AT_CHECK([fgrep "I scanned 1 molecules." stdout], 0, [ignore], [ignore]) | 
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|  | 32 | file=water-bounced.xyz | 
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|  | 33 | AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Graph/SubgraphDissection-BoundaryConditions/pre/$file $file], 0) | 
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|  | 34 | AT_CHECK([chmod u+w $file], 0, [ignore], [ignore]) | 
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| [97f9b9] | 35 | AT_CHECK([../../molecuilder -i $file -B "5,0,5,0,0,5" --set-boundary-conditions Bounce Bounce Bounce -v 3 -I], 0, [stdout], [stderr]) | 
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| [c52e08] | 36 | AT_CHECK([fgrep "I scanned 1 molecules." stdout], 0, [ignore], [ignore]) | 
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|  | 37 | file=water-wrapped.xyz | 
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|  | 38 | AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Graph/SubgraphDissection-BoundaryConditions/pre/$file $file], 0) | 
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|  | 39 | AT_CHECK([chmod u+w $file], 0, [ignore], [ignore]) | 
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| [97f9b9] | 40 | AT_CHECK([../../molecuilder -i $file -B "5,0,5,0,0,5" --set-boundary-conditions Bounce Bounce Bounce -v 3 -I], 0, [stdout], [stderr]) | 
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| [c52e08] | 41 | AT_CHECK([fgrep "I scanned 2 molecules." stdout], 0, [ignore], [ignore]) | 
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|  | 42 |  | 
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|  | 43 | AT_CLEANUP | 
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|  | 44 |  | 
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|  | 45 | AT_SETUP([Graph - subgraph dissection with Ignore BC]) | 
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|  | 46 | AT_KEYWORDS([graph subgraph-dissection set-boundary-conditions]) | 
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|  | 47 |  | 
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|  | 48 | file=water.xyz | 
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|  | 49 | AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Graph/SubgraphDissection-BoundaryConditions/pre/$file $file], 0) | 
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|  | 50 | AT_CHECK([chmod u+w $file], 0, [ignore], [ignore]) | 
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| [97f9b9] | 51 | AT_CHECK([../../molecuilder -i $file -B "5,0,5,0,0,5" --set-boundary-conditions Ignore Ignore Ignore -v 3 -I], 0, [stdout], [stderr]) | 
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| [c52e08] | 52 | AT_CHECK([fgrep "I scanned 1 molecules." stdout], 0, [ignore], [ignore]) | 
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|  | 53 | file=water-bounced.xyz | 
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|  | 54 | AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Graph/SubgraphDissection-BoundaryConditions/pre/$file $file], 0) | 
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|  | 55 | AT_CHECK([chmod u+w $file], 0, [ignore], [ignore]) | 
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| [97f9b9] | 56 | AT_CHECK([../../molecuilder -i $file -B "5,0,5,0,0,5" --set-boundary-conditions Ignore Ignore Ignore -v 3 -I], 0, [stdout], [stderr]) | 
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| [c52e08] | 57 | AT_CHECK([fgrep "I scanned 1 molecules." stdout], 0, [ignore], [ignore]) | 
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|  | 58 | file=water-wrapped.xyz | 
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|  | 59 | AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Graph/SubgraphDissection-BoundaryConditions/pre/$file $file], 0) | 
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|  | 60 | AT_CHECK([chmod u+w $file], 0, [ignore], [ignore]) | 
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| [97f9b9] | 61 | AT_CHECK([../../molecuilder -i $file -B "5,0,5,0,0,5" --set-boundary-conditions Ignore Ignore Ignore -v 3 -I], 0, [stdout], [stderr]) | 
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| [c52e08] | 62 | AT_CHECK([fgrep "I scanned 2 molecules." stdout], 0, [ignore], [ignore]) | 
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|  | 63 |  | 
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|  | 64 | AT_CLEANUP | 
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|  | 65 |  | 
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