source: tests/regression/Fragmentation/testsuite-fragmentation.at@ e9f307

Candidate_v1.7.0 stable
Last change on this file since e9f307 was 999eaf, checked in by Frederik Heber <frederik.heber@…>, 5 years ago

Added EvaluateStabilityAction to estimate a molecule's stability.

  • removes every bond and checks the energies of the products against the educt equipped with enough hydrogen molecules to compensate for the cut bond times its degree.
  • outputs a CSV file with entries per bond.
  • extended HomologyGraph to allow direct use of AtomIdSet, i.e. atomic ids coming from a selection in the World or from the molecule.
  • DOCU: Added subsection on this action to section homology.
  • TEST: Added regression test case.
  • Property mode set to 100644
File size: 2.0 KB
Line 
1#
2# MoleCuilder - creates and alters molecular systems
3# Copyright (C) 2008-2012 University of Bonn
4# Copyright (C) 2013-2016 Frederik Heber
5#
6# This program is free software: you can redistribute it and/or modify
7# it under the terms of the GNU General Public License as published by
8# the Free Software Foundation, either version 3 of the License, or
9# (at your option) any later version.
10#
11# This program is distributed in the hope that it will be useful,
12# but WITHOUT ANY WARRANTY; without even the implied warranty of
13# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
14# GNU General Public License for more details.
15#
16# You should have received a copy of the GNU General Public License
17# along with this program. If not, see <http://www.gnu.org/licenses/>.
18#
19AT_BANNER([MoleCuilder - fragmentation tests])
20
21# check fragmentation
22m4_include([Fragmentation/FragmentMolecule/testsuite-fragmentation-fragment-molecule.at])
23
24# check analysis
25m4_include([Fragmentation/AnalyseFragmentationResults/testsuite-fragmentation-analyse-fragment-results.at])
26
27# check whether parsing of BondFragment files and re-rwriting config files is working (exit code is 2 as we don't need to continue wrt to ...OrderAtSite)
28m4_include([Fragmentation/FragmentMolecule-MaxOrder/testsuite-fragmentation-fragment-molecule-maxorder.at])
29
30# check storing saturated fragment
31m4_include([Fragmentation/StoreSaturatedFragment/testsuite-fragmentation-store-saturated-fragment.at])
32
33# check whether helper program works
34m4_include([Fragmentation/DiffFragmentResultContainer/testsuite-fragmentation-difffragmenresultcontainer.at])
35
36# check automation
37m4_include([Fragmentation/FragmentationAutomation/testsuite-fragmentation-fragmentation-automation.at])
38
39# parse/save state of FragmentationResultsContainer
40m4_include([Fragmentation/ParseSaveFragmentResults/testsuite-fragmentation-parse-save-fragment-results.at])
41
42# evaluate stability of a molecule from homology graphs
43m4_include([Fragmentation/EvaluateStability/testsuite-fragmentation-evaluate-stability.at])
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