Action_Thermostats
Add_AtomRandomPerturbation
Add_SelectAtomByNameAction
Adding_Graph_to_ChangeBondActions
Adding_MD_integration_tests
Adding_StructOpt_integration_tests
AutomationFragmentation_failures
Candidate_v1.6.1
Candidate_v1.7.0
ChangeBugEmailaddress
ChemicalSpaceEvaluator
EmpiricalPotential_contain_HomologyGraph_documentation
Enhance_userguide
Enhanced_StructuralOptimization
Enhanced_StructuralOptimization_continued
Example_ManyWaysToTranslateAtom
Exclude_Hydrogens_annealWithBondGraph
Fix_Verbose_Codepatterns
ForceAnnealing_oldresults
ForceAnnealing_with_BondGraph
ForceAnnealing_with_BondGraph_continued
ForceAnnealing_with_BondGraph_continued_betteresults
ForceAnnealing_with_BondGraph_contraction-expansion
GeometryObjects
Gui_displays_atomic_force_velocity
IndependentFragmentGrids_IntegrationTest
JobMarket_RobustOnKillsSegFaults
JobMarket_StableWorkerPool
PythonUI_with_named_parameters
QtGui_reactivate_TimeChanged_changes
Recreated_GuiChecks
StoppableMakroAction
TremoloParser_IncreasedPrecision
TremoloParser_MultipleTimesteps
stable
|
Last change
on this file since fd4e8c was 5aaa43, checked in by Frederik Heber <heber@…>, 12 years ago |
|
FIX: Fixed new copyright line since start of 2013 in CodeChecks test.
- we must look for either Uni Bonn or myself.
- added second copyright line since from 1st of Jan 2013 I am not employed
by University of Bonn anymore, hence changes to the code are my own
copyright.
|
-
Property mode
set to
100644
|
|
File size:
1.7 KB
|
| Rev | Line | |
|---|
| [5589e7e] | 1 | #
|
|---|
| 2 | # MoleCuilder - creates and alters molecular systems
|
|---|
| 3 | # Copyright (C) 2013 University of Bonn
|
|---|
| [5aaa43] | 4 | # Copyright (C) 2013 Frederik Heber
|
|---|
| [5589e7e] | 5 | #
|
|---|
| 6 | # This program is free software: you can redistribute it and/or modify
|
|---|
| 7 | # it under the terms of the GNU General Public License as published by
|
|---|
| 8 | # the Free Software Foundation, either version 3 of the License, or
|
|---|
| 9 | # (at your option) any later version.
|
|---|
| 10 | #
|
|---|
| 11 | # This program is distributed in the hope that it will be useful,
|
|---|
| 12 | # but WITHOUT ANY WARRANTY; without even the implied warranty of
|
|---|
| 13 | # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
|---|
| 14 | # GNU General Public License for more details.
|
|---|
| 15 | #
|
|---|
| 16 | # You should have received a copy of the GNU General Public License
|
|---|
| 17 | # along with this program. If not, see <http://www.gnu.org/licenses/>.
|
|---|
| 18 | #
|
|---|
| 19 | ### store a saturated fragment of a molecule
|
|---|
| 20 |
|
|---|
| 21 | AT_SETUP([Fragmentation - Store saturated fragment])
|
|---|
| 22 | AT_KEYWORDS([fragmentation store-saturated-fragment])
|
|---|
| 23 | AT_XFAIL_IF([/bin/false])
|
|---|
| 24 |
|
|---|
| 25 | file=BondFragment0.xyz
|
|---|
| 26 | AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Fragmentation/StoreSaturatedFragment/pre/C6-0.Sheet.Aligned.xyz C6-0.Sheet.Aligned.xyz], 0)
|
|---|
| 27 | length="10.5"
|
|---|
| 28 | AT_CHECK([../../molecuilder -i C6-0.Sheet.Aligned.xyz --add-empty-boundary .6,.6,5 --select-all-atoms --create-adjacency --create-shape --shape-type cube --stretch $length,$length,2 --translation 10,10,4 --shape-name testfragment --select-shape-by-name testfragment --clear-atom-selection --select-atoms-inside-volume --store-saturated-fragment BondFragment --DoSaturate 1 --output-types xyz], 0, [ignore], [ignore])
|
|---|
| 29 | #AT_CHECK([diff -I '.*reated by.*' $file ${abs_top_srcdir}/tests/regression/Fragmentation/StoreSaturatedFragment/post/$file], 0, [ignore], [ignore])
|
|---|
| 30 |
|
|---|
| 31 | AT_CLEANUP
|
|---|
Note:
See
TracBrowser
for help on using the repository browser.
