Action_Thermostats
        Add_AtomRandomPerturbation
        Add_FitFragmentPartialChargesAction
        Add_RotateAroundBondAction
        Add_SelectAtomByNameAction
        Added_ParseSaveFragmentResults
        AddingActions_SaveParseParticleParameters
        Adding_Graph_to_ChangeBondActions
        Adding_MD_integration_tests
        Adding_ParticleName_to_Atom
        Adding_StructOpt_integration_tests
        AtomFragments
        Automaking_mpqc_open
        AutomationFragmentation_failures
        Candidate_v1.5.4
        Candidate_v1.6.0
        Candidate_v1.6.1
        Candidate_v1.7.0
        ChangeBugEmailaddress
        ChangingTestPorts
        ChemicalSpaceEvaluator
        CombiningParticlePotentialParsing
        Combining_Subpackages
        Debian_Package_split
        Debian_package_split_molecuildergui_only
        Disabling_MemDebug
        Docu_Python_wait
        EmpiricalPotential_contain_HomologyGraph
        EmpiricalPotential_contain_HomologyGraph_documentation
        Enable_parallel_make_install
        Enhance_userguide
        Enhanced_StructuralOptimization
        Enhanced_StructuralOptimization_continued
        Example_ManyWaysToTranslateAtom
        Exclude_Hydrogens_annealWithBondGraph
        FitPartialCharges_GlobalError
        Fix_BoundInBox_CenterInBox_MoleculeActions
        Fix_ChargeSampling_PBC
        Fix_ChronosMutex
        Fix_FitPartialCharges
        Fix_FitPotential_needs_atomicnumbers
        Fix_ForceAnnealing
        Fix_IndependentFragmentGrids
        Fix_ParseParticles
        Fix_ParseParticles_split_forward_backward_Actions
        Fix_PopActions
        Fix_QtFragmentList_sorted_selection
        Fix_Restrictedkeyset_FragmentMolecule
        Fix_StatusMsg
        Fix_StepWorldTime_single_argument
        Fix_Verbose_Codepatterns
        Fix_fitting_potentials
        Fixes
        ForceAnnealing_goodresults
        ForceAnnealing_oldresults
        ForceAnnealing_tocheck
        ForceAnnealing_with_BondGraph
        ForceAnnealing_with_BondGraph_continued
        ForceAnnealing_with_BondGraph_continued_betteresults
        ForceAnnealing_with_BondGraph_contraction-expansion
        FragmentAction_writes_AtomFragments
        FragmentMolecule_checks_bonddegrees
        GeometryObjects
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        Gui_displays_atomic_force_velocity
        ImplicitCharges
        IndependentFragmentGrids
        IndependentFragmentGrids_IndividualZeroInstances
        IndependentFragmentGrids_IntegrationTest
        IndependentFragmentGrids_Sole_NN_Calculation
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        JobMarket_StableWorkerPool
        JobMarket_unresolvable_hostname_fix
        MoreRobust_FragmentAutomation
        ODR_violation_mpqc_open
        PartialCharges_OrthogonalSummation
        PdbParser_setsAtomName
        PythonUI_with_named_parameters
        QtGui_reactivate_TimeChanged_changes
        Recreated_GuiChecks
        Rewrite_FitPartialCharges
        RotateToPrincipalAxisSystem_UndoRedo
        SaturateAtoms_findBestMatching
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        Subpackage_JobMarket
        Subpackage_LinearAlgebra
        Subpackage_levmar
        Subpackage_mpqc_open
        Subpackage_vmg
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        TremoloParser_IncreasedPrecision
        TremoloParser_MultipleTimesteps
        TremoloParser_setsAtomName
        Ubuntu_1604_changes
        stable
      
      
        
          | Last change
 on this file since e23075 was             f89b45, checked in by Frederik Heber <heber@…>, 14 years ago | 
        
          | 
Added Reaction CalculateBoundingBoxAction.
 
exporting std::vector<double> as return value.
 had to add trick with exporting std::vector<double> to python with help from
stackoverflow("does boost python support a function returning a vector, by
ref or value?") answer. We construct a vec_item template class which exports
getter/setter, append, ... functionality to python.
This ends in typedef doubleVec in namespace MoleCuilder::PythonTypes, while
within the Reaction its just a typedef defined in the .def file.
this type had to be prefix with PythonType_ to make it distinguishable from
the functions in dir(mol) for Python/AllActions regression test.
TESTFIX: Also we modified Python/AllActions regression test to go in a loop
over each command, thus stdout and stderr can be uniquely associated to the
very command that caused them. This makes debugging a lot easier ... for
this purpose the dir(mol) and filtering was placed into new listcmds.py.
 | 
        
          | 
              
Property                 mode
 set to                 100644 | 
        
          | File size:
            919 bytes | 
      
      
| Rev | Line |  | 
|---|
| [f89b45] | 1 | ### calculate bounding box | 
|---|
|  | 2 |  | 
|---|
|  | 3 | AT_SETUP([Analysis - Calculate bounding box]) | 
|---|
|  | 4 | AT_KEYWORDS([analysis reaction calculate-bounding-box]) | 
|---|
|  | 5 |  | 
|---|
|  | 6 | # default domain | 
|---|
|  | 7 | AT_CHECK([../../molecuilder --calculate-bounding-box], 0, [stdout], [stderr]) | 
|---|
|  | 8 | AT_CHECK([egrep "RESULT" stdout], 0, [ignore], [ignore]) | 
|---|
|  | 9 | AT_CHECK([egrep "bounding box is .*0; 20; 0; 20; 0; 20" stdout], 0, [ignore], [ignore]) | 
|---|
|  | 10 |  | 
|---|
|  | 11 | # specific box | 
|---|
|  | 12 | AT_CHECK([../../molecuilder -B "10,0,12,0,0,14" --calculate-bounding-box], 0, [stdout], [stderr]) | 
|---|
|  | 13 | AT_CHECK([egrep "RESULT" stdout], 0, [ignore], [ignore]) | 
|---|
|  | 14 | AT_CHECK([egrep "bounding box is .*0; 10; 0; 12; 0; 14" stdout], 0, [ignore], [ignore]) | 
|---|
|  | 15 |  | 
|---|
|  | 16 | # special domain | 
|---|
|  | 17 | AT_CHECK([../../molecuilder -B "10,2,10,4,6,10" --calculate-bounding-box], 0, [stdout], [stderr]) | 
|---|
|  | 18 | AT_CHECK([egrep "RESULT" stdout], 0, [ignore], [ignore]) | 
|---|
|  | 19 | AT_CHECK([egrep "bounding box is .*0; 7.660.*; 0; 5.421.*; 0; 4.755.*;" stdout], 0, [ignore], [ignore]) | 
|---|
|  | 20 |  | 
|---|
|  | 21 | AT_CLEANUP | 
|---|
       
      
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