source: tests/Tesselations/cholesterol/NonConvexEnvelope-cholesterol.dat@ 6a7f78c

Action_Thermostats Add_AtomRandomPerturbation Add_FitFragmentPartialChargesAction Add_RotateAroundBondAction Add_SelectAtomByNameAction Added_ParseSaveFragmentResults AddingActions_SaveParseParticleParameters Adding_Graph_to_ChangeBondActions Adding_MD_integration_tests Adding_ParticleName_to_Atom Adding_StructOpt_integration_tests AtomFragments Automaking_mpqc_open AutomationFragmentation_failures Candidate_v1.5.4 Candidate_v1.6.0 Candidate_v1.6.1 ChangeBugEmailaddress ChangingTestPorts ChemicalSpaceEvaluator CombiningParticlePotentialParsing Combining_Subpackages Debian_Package_split Debian_package_split_molecuildergui_only Disabling_MemDebug Docu_Python_wait EmpiricalPotential_contain_HomologyGraph EmpiricalPotential_contain_HomologyGraph_documentation Enable_parallel_make_install Enhance_userguide Enhanced_StructuralOptimization Enhanced_StructuralOptimization_continued Example_ManyWaysToTranslateAtom Exclude_Hydrogens_annealWithBondGraph FitPartialCharges_GlobalError Fix_BoundInBox_CenterInBox_MoleculeActions Fix_ChargeSampling_PBC Fix_ChronosMutex Fix_FitPartialCharges Fix_FitPotential_needs_atomicnumbers Fix_ForceAnnealing Fix_IndependentFragmentGrids Fix_ParseParticles Fix_ParseParticles_split_forward_backward_Actions Fix_PopActions Fix_QtFragmentList_sorted_selection Fix_Restrictedkeyset_FragmentMolecule Fix_StatusMsg Fix_StepWorldTime_single_argument Fix_Verbose_Codepatterns Fix_fitting_potentials Fixes ForceAnnealing_goodresults ForceAnnealing_oldresults ForceAnnealing_tocheck ForceAnnealing_with_BondGraph ForceAnnealing_with_BondGraph_continued ForceAnnealing_with_BondGraph_continued_betteresults ForceAnnealing_with_BondGraph_contraction-expansion FragmentAction_writes_AtomFragments FragmentMolecule_checks_bonddegrees GeometryObjects Gui_Fixes Gui_displays_atomic_force_velocity ImplicitCharges IndependentFragmentGrids IndependentFragmentGrids_IndividualZeroInstances IndependentFragmentGrids_IntegrationTest IndependentFragmentGrids_Sole_NN_Calculation JobMarket_RobustOnKillsSegFaults JobMarket_StableWorkerPool JobMarket_unresolvable_hostname_fix MoreRobust_FragmentAutomation ODR_violation_mpqc_open PartialCharges_OrthogonalSummation PdbParser_setsAtomName PythonUI_with_named_parameters QtGui_reactivate_TimeChanged_changes Recreated_GuiChecks Rewrite_FitPartialCharges RotateToPrincipalAxisSystem_UndoRedo SaturateAtoms_findBestMatching SaturateAtoms_singleDegree StoppableMakroAction Subpackage_CodePatterns Subpackage_JobMarket Subpackage_LinearAlgebra Subpackage_levmar Subpackage_mpqc_open Subpackage_vmg Switchable_LogView ThirdParty_MPQC_rebuilt_buildsystem TrajectoryDependenant_MaxOrder TremoloParser_IncreasedPrecision TremoloParser_MultipleTimesteps TremoloParser_setsAtomName Ubuntu_1604_changes stable
Last change on this file since 6a7f78c was 6a7f78c, checked in by Frederik Heber <heber@…>, 15 years ago

Fixes and naming of final Tecplot output file is now molecule name.

  • FIXES to builder.cpp:
    • case 'p' would not dissect the molecule into connected subgraphs
    • if done so, the BondGraph was not yet initialised
    • if done so, we need to check whether BondGraphFileName has been set
    • BondGraphFileName.empty() could not be used as a check, as was set to "" instead of "\n"
    • if (finally) done so, we have to remove the empty molecule that we parsed in
    • ... and then pick the newly added molecule for mol to point at
    • SaveConfig() did not set the merged molecule name correctly.
    • if empty config is given, the empty molecule now receives the ConfigFileName as name
  • FIXES to config.cpp
    • Load() did not set the name of the molecule
  • changes to tesselationhelper.cpp and tesselation.cpp
  • changes to PointCloud and molecule
    • new virtual function PointCloud::GetName() returns "unknown"
    • new function molecule::GetName() returns pointer to name of molecule
    • IsEmpty() and IsEnd() now return true by default
  • all .dat files in the "Tesselations" tests were changed accordingly (i.e. have now the name in the second line)
  • benzene was added as a new test for an absolutely flat molecule. So far, it fails horribly.
  • 13 of 17 tests run fine

Signed-off-by: Frederik Heber <heber@…>

  • Property mode set to 100644
File size: 1.8 KB
Line 
1TITLE = "3D CONVEX SHELL"
2VARIABLES = "X" "Y" "Z" "U"
3ZONE T="cholesterol", N=44, E=86, DATAPACKING=POINT, ZONETYPE=FETRIANGLE
419.4519 9.7871 8.0824 1
512.9054 5.0485 9.284 1
613.0326 5.0782 7.5089 3
714.0427 6.1653 8.4918 4
810.5908 5.1013 8.4972 2
911.3559 8.4775 9.4786 3
1011.8277 7.0719 10.4739 1
1114.3069 7.2286 7.1261 4
1211.5412 7.3181 5.0762 2
1312.5659 6.0136 5.7602 1
149.6557 7.1059 9.7153 2
1510.4863 5 6.1988 0
169.6183 6.5619 6.1938 1
1713.5795 8.855 10.503 3
1814.1767 7.3442 9.7916 2
1913.2713 9.8535 8.3204 3
2013.8816 8.3823 5 2
2113.1478 9.7624 5.8484 3
229.3408 8.1724 6.8729 3
237.3633 6.8086 8.9297 1
247.9417 6.2044 7.3585 2
258.2057 5.2436 8.8335 0
2615.7352 9.9982 5.1256 1
278.4537 9.3077 9.5638 3
2815.3573 10.1541 10.4713 0
2916.4579 10.9701 9.3349 0
3014.7032 11.2503 9.2308 2
3116.2048 8.2172 10.1006 2
3215.7449 7.2346 8.6921 4
339.244 11.0354 7.9704 5
348.1672 10.3727 6.7177 3
3517.8035 10.1312 6.2165 0
3617.2305 11.4439 7.2835 0
3718.2902 7.7734 9.165 0
3817.6654 7.7898 7.5028 4
397.2801 11.5079 9.4086 0
4017.8169 10.2833 9.2438 2
416.3048 13.3192 8.0242 0
428.0704 13.2356 7.8152 1
436.9936 12.5729 6.5625 0
445.8361 9.6688 8.5834 2
455 11.2362 8.4728 0
465.6888 10.4899 7.0111 1
4719.6833 10.7212 7.9874 0
48
491 32 44
501 32 35
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