| 1 | #
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| 2 | # MoleCuilder - creates and alters molecular systems
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| 3 | # Copyright (C) 2008-2012 University of Bonn
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| 4 | #
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| 5 | # This program is free software: you can redistribute it and/or modify
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| 6 | # it under the terms of the GNU General Public License as published by
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| 7 | # the Free Software Foundation, either version 3 of the License, or
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| 8 | # (at your option) any later version.
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| 9 | #
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| 10 | # This program is distributed in the hope that it will be useful,
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| 11 | # but WITHOUT ANY WARRANTY; without even the implied warranty of
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| 12 | # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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| 13 | # GNU General Public License for more details.
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| 14 | #
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| 15 | # You should have received a copy of the GNU General Public License
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| 16 | # along with this program. If not, see <http://www.gnu.org/licenses/>.
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| 17 | #
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| 18 | ### check whether parsing of BondFragment files and re-rwriting config files is working (exit code is 2 as we don't need to continue wrt to ...OrderAtSite)
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| 19 |
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| 20 | # NOTE: Result code of 2 is not returned if "-v 1" is missing, then sequence of atoms is changed all the time and Adjacency files never match.
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| 21 | AT_SETUP([Fragmentation - Fragmentation is at MaxOrder])
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| 22 | AT_KEYWORDS([fragmentation fragment-molecule])
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| 23 | # is set to XFAIL as OrderAtSite is currently deleted after fragmentation
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| 24 | # since it comes in the way of molecular dynamic runs (which is a MakroAction)
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| 25 | # hence we have no way of removing OrderAtSite only for this action.
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| 26 | AT_XFAIL_IF([/bin/true])
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| 27 |
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| 28 | file=test.conf
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| 29 | AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Fragmentation/FragmentMolecule-MaxOrder/pre/test.conf $file], 0)
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| 30 | AT_CHECK([chmod u+w $file], 0, [ignore], [ignore])
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| 31 | AT_CHECK([../../molecuilder --dry-run -i $file -I -v 1 --select-molecule-by-id 0 --select-molecules-atoms -f ./BondFragment --distance 1.55 --order 2 --output-types "pcp" --no-dry-run --store-session session-fragmentation-fragment-molecule-maxorder.py --session-type python], 0, [ignore], [ignore])
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| 32 | AT_CHECK([grep -v "Command.*DryRun" session-fragmentation-fragment-molecule-maxorder.py >session-fragmentation-fragment-molecule-maxorder_new.py], 0, [ignore], [ignore])
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| 33 | AT_CHECK([../../molecuilderguitest session-fragmentation-fragment-molecule-maxorder_new.py], 0, [ignore], [ignore])
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| 34 | AT_CHECK([../../molecuilder --dry-run -i $file -I -v 1 --select-molecule-by-id 0 --select-molecules-atoms -f ./BondFragment --distance 1.55 --order 2 --output-types "pcp" --no-dry-run --store-session session-fragmentation-fragment-molecule-maxorder.py --session-type python], 0, [ignore], [ignore])
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| 35 | AT_CHECK([grep -v "Command.*DryRun" session-fragmentation-fragment-molecule-maxorder.py >session-fragmentation-fragment-molecule-maxorder_new.py], 0, [ignore], [ignore])
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| 36 | AT_CHECK([../../molecuilderguitest session-fragmentation-fragment-molecule-maxorder_new.py], 2, [ignore], [ignore])
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| 37 |
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| 38 | AT_CLEANUP
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