1 | #
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2 | # MoleCuilder - creates and alters molecular systems
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3 | # Copyright (C) 2008-2012 University of Bonn
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4 | #
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5 | # This program is free software: you can redistribute it and/or modify
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6 | # it under the terms of the GNU General Public License as published by
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7 | # the Free Software Foundation, either version 3 of the License, or
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8 | # (at your option) any later version.
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9 | #
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10 | # This program is distributed in the hope that it will be useful,
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11 | # but WITHOUT ANY WARRANTY; without even the implied warranty of
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12 | # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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13 | # GNU General Public License for more details.
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14 | #
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15 | # You should have received a copy of the GNU General Public License
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16 | # along with this program. If not, see <http://www.gnu.org/licenses/>.
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17 | #
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18 | ### Removing atoms inside and outside of sphere
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19 |
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20 | AT_SETUP([Atoms - Removing sphere of atoms])
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21 | AT_KEYWORDS([atoms remove-atom])
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22 |
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23 | file=test-withoutsphere.xyz
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24 | AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Atoms/RemoveSphere/pre/test.xyz $file], 0)
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25 | AT_CHECK([chmod u+w $file], 0)
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26 | AT_CHECK([../../molecuilder --dry-run -i $file --create-shape --shape-name "sphere1" --shape-type "sphere" --translation "7.283585982, 3.275186040, 3.535886037" --stretch "7., 7., 7." --angle-x 0. --angle-y 0. --angle-z 0. --select-shape-by-name "sphere1" --select-atoms-inside-volume -r --no-dry-run --store-session session-atoms-remove-sphere.py --session-type python], 0, [stdout], [stderr])
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27 | AT_CHECK([grep -v "Command.*DryRun" session-atoms-remove-sphere.py >session-atoms-remove-sphere_new.py], 0, [ignore], [ignore])
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28 | AT_CHECK([../../molecuilderguitest session-atoms-remove-sphere_new.py], 0, [stdout], [stderr])
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29 | AT_CHECK([sort -n $file | grep -v -E "^[[[:digit:]]]+" | grep -v "Created by" >test-withoutsphere.xyz-sorted], 0, [ignore], [ignore])
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30 | AT_CHECK([file=test-withoutsphere.xyz-sorted; diff $file ${abs_top_srcdir}/tests/regression/Atoms/RemoveSphere/post/test-withoutsphere.xyz-sorted], 0, [ignore], [ignore])
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31 |
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32 | file=test-sphere.xyz
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33 | AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Atoms/RemoveSphere/pre/test.xyz $file], 0)
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34 | AT_CHECK([chmod u+w $file], 0)
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35 | AT_CHECK([../../molecuilder --dry-run -i $file --select-all-atoms --create-shape --shape-name "sphere1" --shape-type "sphere" --translation "7.283585982, 3.275186040, 3.535886037" --stretch "7., 7., 7." --angle-x 0. --angle-y 0. --angle-z 0. --select-shape-by-name "sphere1" --unselect-atoms-inside-volume -r --no-dry-run --store-session session-atoms-remove-sphere.py --session-type python], 0, [stdout], [stderr])
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36 | AT_CHECK([grep -v "Command.*DryRun" session-atoms-remove-sphere.py >session-atoms-remove-sphere_new.py], 0, [ignore], [ignore])
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37 | AT_CHECK([../../molecuilderguitest session-atoms-remove-sphere_new.py], 0, [stdout], [stderr])
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38 | AT_CHECK([sort -n $file | grep -v -E "^[[[:digit:]]]+" | grep -v "Created by" >test-sphere.xyz-sorted], 0, [ignore], [ignore])
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39 | AT_CHECK([file=test-sphere.xyz-sorted; diff $file ${abs_top_srcdir}/tests/regression/Atoms/RemoveSphere/post/test-sphere.xyz-sorted], 0, [ignore], [ignore])
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40 | AT_CHECK([cat test-sphere.xyz-sorted test-withoutsphere.xyz-sorted | sort -n >test.xyz-sorted], 0, [ignore], [ignore])
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41 | AT_CHECK([file=test.xyz-sorted; diff $file ${abs_top_srcdir}/tests/regression/Atoms/RemoveSphere/post/test.xyz-sorted], 0, [ignore], [ignore])
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42 |
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43 | AT_CLEANUP
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44 |
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45 |
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46 | AT_SETUP([Atoms - Removing sphere of atoms with Undo])
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47 | AT_KEYWORDS([atoms remove-atom undo])
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48 |
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49 | file=test.xyz
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50 | AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Atoms/RemoveSphere/pre/test.xyz $file], 0)
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51 | AT_CHECK([chmod u+w $file], 0)
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52 | AT_CHECK([../../molecuilder --dry-run -i $file --create-shape --shape-name "sphere1" --shape-type "sphere" --translation "7.283585982, 3.275186040, 3.535886037" --stretch "7., 7., 7." --angle-x 0. --angle-y 0. --angle-z 0. --select-shape-by-name "sphere1" --select-atoms-inside-volume -r --undo --no-dry-run --store-session session-atoms-remove-sphere.py --session-type python], 0, [stdout], [stderr])
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53 | AT_CHECK([grep -v "Command.*DryRun" session-atoms-remove-sphere.py >session-atoms-remove-sphere_new.py], 0, [ignore], [ignore])
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54 | AT_CHECK([../../molecuilderguitest session-atoms-remove-sphere_new.py], 0, [stdout], [stderr])
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55 | AT_CHECK([diff -I '.*Created by molecuilder.*' $file ${abs_top_srcdir}/tests/regression/Atoms/RemoveSphere/pre/$file], 0, [ignore], [ignore])
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56 |
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57 | file=test.xyz
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58 | AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Atoms/RemoveSphere/pre/test.xyz $file], 0)
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59 | AT_CHECK([chmod u+w $file], 0)
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60 | AT_CHECK([../../molecuilder --dry-run -i $file --select-all-atoms --create-shape --shape-name "sphere1" --shape-type "sphere" --translation "7.283585982, 3.275186040, 3.535886037" --stretch "7., 7., 7." --angle-x 0. --angle-y 0. --angle-z 0. --select-shape-by-name "sphere1" --unselect-atoms-inside-volume -r --undo --no-dry-run --store-session session-atoms-remove-sphere.py --session-type python], 0, [stdout], [stderr])
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61 | AT_CHECK([grep -v "Command.*DryRun" session-atoms-remove-sphere.py >session-atoms-remove-sphere_new.py], 0, [ignore], [ignore])
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62 | AT_CHECK([../../molecuilderguitest session-atoms-remove-sphere_new.py], 0, [stdout], [stderr])
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63 | AT_CHECK([diff -I '.*Created by molecuilder.*' $file ${abs_top_srcdir}/tests/regression/Atoms/RemoveSphere/pre/$file], 0, [ignore], [ignore])
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64 |
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65 | AT_CLEANUP
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66 |
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67 |
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68 | AT_SETUP([Atoms - Removing sphere of atoms with Redo])
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69 | AT_KEYWORDS([atoms remove-atom redo])
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70 |
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71 | file=test-withoutsphere.xyz
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72 | AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Atoms/RemoveSphere/pre/test.xyz $file], 0)
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73 | AT_CHECK([chmod u+w $file], 0)
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74 | AT_CHECK([../../molecuilder --dry-run -i $file --create-shape --shape-name "sphere1" --shape-type "sphere" --translation "7.283585982, 3.275186040, 3.535886037" --stretch "7., 7., 7." --angle-x 0. --angle-y 0. --angle-z 0. --select-shape-by-name "sphere1" --select-atoms-inside-volume -r --undo --redo --no-dry-run --store-session session-atoms-remove-sphere.py --session-type python], 0, [stdout], [stderr])
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75 | AT_CHECK([grep -v "Command.*DryRun" session-atoms-remove-sphere.py >session-atoms-remove-sphere_new.py], 0, [ignore], [ignore])
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76 | AT_CHECK([../../molecuilderguitest session-atoms-remove-sphere_new.py], 0, [stdout], [stderr])
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77 | AT_CHECK([sort -n $file | grep -v -E "^[[[:digit:]]]+" | grep -v "Created by" >test-withoutsphere.xyz-sorted], 0, [ignore], [ignore])
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78 | AT_CHECK([file=test-withoutsphere.xyz-sorted; diff $file ${abs_top_srcdir}/tests/regression/Atoms/RemoveSphere/post/test-withoutsphere.xyz-sorted], 0, [ignore], [ignore])
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79 |
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80 | file=test-sphere.xyz
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81 | AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Atoms/RemoveSphere/pre/test.xyz $file], 0)
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82 | AT_CHECK([chmod u+w $file], 0)
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83 | AT_CHECK([../../molecuilder --dry-run -i $file --select-all-atoms --create-shape --shape-name "sphere1" --shape-type "sphere" --translation "7.283585982, 3.275186040, 3.535886037" --stretch "7., 7., 7." --angle-x 0. --angle-y 0. --angle-z 0. --select-shape-by-name "sphere1" --unselect-atoms-inside-volume -r --undo --redo --no-dry-run --store-session session-atoms-remove-sphere.py --session-type python], 0, [stdout], [stderr])
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84 | AT_CHECK([grep -v "Command.*DryRun" session-atoms-remove-sphere.py >session-atoms-remove-sphere_new.py], 0, [ignore], [ignore])
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85 | AT_CHECK([../../molecuilderguitest session-atoms-remove-sphere_new.py], 0, [stdout], [stderr])
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86 | AT_CHECK([sort -n $file | grep -v -E "^[[[:digit:]]]+" | grep -v "Created by" >test-sphere.xyz-sorted], 0, [ignore], [ignore])
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87 | AT_CHECK([file=test-sphere.xyz-sorted; diff $file ${abs_top_srcdir}/tests/regression/Atoms/RemoveSphere/post/test-sphere.xyz-sorted], 0, [ignore], [ignore])
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88 | AT_CHECK([cat test-sphere.xyz-sorted test-withoutsphere.xyz-sorted | sort -n >test.xyz-sorted], 0, [ignore], [ignore])
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89 | AT_CHECK([file=test.xyz-sorted; diff $file ${abs_top_srcdir}/tests/regression/Atoms/RemoveSphere/post/test.xyz-sorted], 0, [ignore], [ignore])
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90 |
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91 | AT_CLEANUP
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