source: src@ 59739e

Action_Thermostats Add_AtomRandomPerturbation Add_FitFragmentPartialChargesAction Add_RotateAroundBondAction Add_SelectAtomByNameAction Added_ParseSaveFragmentResults AddingActions_SaveParseParticleParameters Adding_Graph_to_ChangeBondActions Adding_MD_integration_tests Adding_ParticleName_to_Atom Adding_StructOpt_integration_tests AtomFragments Automaking_mpqc_open AutomationFragmentation_failures Candidate_v1.5.4 Candidate_v1.6.0 Candidate_v1.6.1 Candidate_v1.7.0 ChangeBugEmailaddress ChangingTestPorts ChemicalSpaceEvaluator CombiningParticlePotentialParsing Combining_Subpackages Debian_Package_split Debian_package_split_molecuildergui_only Disabling_MemDebug Docu_Python_wait EmpiricalPotential_contain_HomologyGraph EmpiricalPotential_contain_HomologyGraph_documentation Enable_parallel_make_install Enhance_userguide Enhanced_StructuralOptimization Enhanced_StructuralOptimization_continued Example_ManyWaysToTranslateAtom Exclude_Hydrogens_annealWithBondGraph FitPartialCharges_GlobalError Fix_BoundInBox_CenterInBox_MoleculeActions Fix_ChargeSampling_PBC Fix_ChronosMutex Fix_FitPartialCharges Fix_FitPotential_needs_atomicnumbers Fix_ForceAnnealing Fix_IndependentFragmentGrids Fix_ParseParticles Fix_ParseParticles_split_forward_backward_Actions Fix_PopActions Fix_QtFragmentList_sorted_selection Fix_Restrictedkeyset_FragmentMolecule Fix_StatusMsg Fix_StepWorldTime_single_argument Fix_Verbose_Codepatterns Fix_fitting_potentials Fixes ForceAnnealing_goodresults ForceAnnealing_oldresults ForceAnnealing_tocheck ForceAnnealing_with_BondGraph ForceAnnealing_with_BondGraph_continued ForceAnnealing_with_BondGraph_continued_betteresults ForceAnnealing_with_BondGraph_contraction-expansion FragmentAction_writes_AtomFragments FragmentMolecule_checks_bonddegrees GeometryObjects Gui_Fixes Gui_displays_atomic_force_velocity ImplicitCharges IndependentFragmentGrids IndependentFragmentGrids_IndividualZeroInstances IndependentFragmentGrids_IntegrationTest IndependentFragmentGrids_Sole_NN_Calculation JobMarket_RobustOnKillsSegFaults JobMarket_StableWorkerPool JobMarket_unresolvable_hostname_fix MoreRobust_FragmentAutomation ODR_violation_mpqc_open PartialCharges_OrthogonalSummation PdbParser_setsAtomName PythonUI_with_named_parameters QtGui_reactivate_TimeChanged_changes Recreated_GuiChecks Rewrite_FitPartialCharges RotateToPrincipalAxisSystem_UndoRedo SaturateAtoms_findBestMatching SaturateAtoms_singleDegree StoppableMakroAction Subpackage_CodePatterns Subpackage_JobMarket Subpackage_LinearAlgebra Subpackage_levmar Subpackage_mpqc_open Subpackage_vmg Switchable_LogView ThirdParty_MPQC_rebuilt_buildsystem TrajectoryDependenant_MaxOrder TremoloParser_IncreasedPrecision TremoloParser_MultipleTimesteps TremoloParser_setsAtomName Ubuntu_1604_changes stable
Name Size Rev Age Author Last Change
../
Actions 5bcbc7   13 years ankele OutputAction added
Analysis 03a589   14 years FrederikHeber Removed lots of remnant output functions in atom and molecule that are …
Atom 4f7f0bf   13 years ankele Fix: atom now sends IndexChanged notification
Bond af9be32   14 years FrederikHeber Added BondInfo to store bond's state information for later …
Descriptors 57f743   14 years FrederikHeber FIX: AtomIdDescriptor was not using internal_iterator but full …
documentation a10cc0   13 years FrederikHeber Moved all Fragmentation/Automation into new subpackage JobMarket. - …
Dynamics 0aa122   14 years FrederikHeber Updated all source files's copyright note to current year 2012.
Element 1ce04b   14 years FrederikHeber TYPO in comment
Filling d496fd   13 years FrederikHeber FIX: SurfaceInserter now always normalizes alignedAxis in cstor.
Fragmentation a10cc0   13 years FrederikHeber Moved all Fragmentation/Automation into new subpackage JobMarket. - …
Graph 108968   14 years FrederikHeber FIX: Rewrite of BondGraph's CreateAdjacency() and …
Helpers 0aa122   14 years FrederikHeber Updated all source files's copyright note to current year 2012.
Jobs b5c39c   13 years FrederikHeber DISTFIX: removed JobMarket/ prefix in install path for headers of …
LinkedCell ce7bfd   14 years FrederikHeber VERBOSE: Subsequent change in verbosity levels of many tesselation …
Parameters 70c33d5   13 years ankele VectorNotZeroValidator: use existing IsZero() test
Parser 59ec04   13 years ankele FormatParserStorage::isAbleToSave() added
RandomNumbers 2169e0   13 years FrederikHeber RandomNumberEngineNameValidator implemented
Shapes b98a32   14 years FrederikHeber FIX: Some fixes to Resize_Impl functions. - replaced 1/ by 1./. - …
Tesselation c1d78c   13 years FrederikHeber FIX: Tesselation_BoundaryTriangleUnitTest did not properly removed …
Thermostats 0aa122   14 years FrederikHeber Updated all source files's copyright note to current year 2012.
UIElements 59739e   13 years FrederikHeber DISTCHECKFIX: QtQuery.hpp appeared twice in Makefile.am. - this would …
unittests 004d5c   13 years FrederikHeber Removed JobMarket as it is now in its own repository. - added …
AtomIdSet.cpp 5.2 KB ​ 6aad6f   14 years FrederikHeber FIX: molecule::containsAtom() is now const and has const param, added …
AtomIdSet.hpp 1.8 KB ​ 6aad6f   14 years FrederikHeber FIX: molecule::containsAtom() is now const and has const param, added …
Box.cpp 11.4 KB ​ 97f9b9   13 years FrederikHeber SetBoundaryConditionsAction requires vector<string> instead of string …
Box.hpp 4.6 KB ​ 97f9b9   13 years FrederikHeber SetBoundaryConditionsAction requires vector<string> instead of string …
Box_BoundaryConditions.cpp 6.7 KB ​ 97f9b9   13 years FrederikHeber SetBoundaryConditionsAction requires vector<string> instead of string …
Box_BoundaryConditions.hpp 2.4 KB ​ de2031   13 years FrederikHeber BoundaryConditionValidator implemented
builder.cpp 858 bytes ​ 05a05e   13 years ankele only saveAll() on exit when using CommandLineUI
builder_init.cpp 3.9 KB ​ 0aa122   14 years FrederikHeber Updated all source files's copyright note to current year 2012.
builder_init.hpp 329 bytes ​ b5d38d   14 years FrederikHeber Moved dumpMemory() and saveAll() from module builder_init to cleanUp.
cleanUp.cpp 4.5 KB ​ c9c3c9   14 years FrederikHeber MEMFIX: Forgot to purge AtomObserver instance.
cleanUp.hpp 354 bytes ​ 567357   14 years FrederikHeber FIX: cleanUp() replaced by module_reinit() and .._exit() in …
config.cpp 1.1 KB ​ 0aa122   14 years FrederikHeber Updated all source files's copyright note to current year 2012.
config.hpp 483 bytes ​ 41a467   14 years FrederikHeber LARGE: config class is now just a tiny container. - this was …
controller.cpp 552 bytes ​ 7da5cd   13 years FrederikHeber Moved all Controller.., ..Options, and .._main() files over to JobMarket.
controller_AddOn_MPQCCommandJob.cpp 579 bytes ​ 014bc4   13 years FrederikHeber Introduced interface controller_AddOn.hpp that encapsulates controller …
controller_MPQCCommandJob.cpp 12.8 KB ​ 004d5c   13 years FrederikHeber Removed JobMarket as it is now in its own repository. - added …
controller_MPQCCommandJob.hpp 1.0 KB ​ 7da5cd   13 years FrederikHeber Moved all Controller.., ..Options, and .._main() files over to JobMarket.
ControllerOptions_MPQCCommandJob.cpp 1.5 KB ​ 103eb8   13 years FrederikHeber Removed SystemCommandJob capabilities from src/controller while …
ControllerOptions_MPQCCommandJob.hpp 792 bytes ​ 103eb8   13 years FrederikHeber Removed SystemCommandJob capabilities from src/controller while …
Formula.cpp 14.5 KB ​ ed26ae   14 years FrederikHeber Renamed calls to element::getNumber() -> ::getAtomicNumber(). - …
Formula.hpp 4.0 KB ​ 47ed3d   14 years FrederikHeber Removed some old output functions in element, Formula, and molecule. …
IdPool.hpp 2.8 KB ​ b97a60   14 years FrederikHeber Modified IdPool implementation to give either unique or continuous …
IdPool_impl.hpp 3.7 KB ​ 5a4cbc   14 years FrederikHeber VERBOSITY: Increased verbosity threshold of some outputs connected to …
IdPool_policy.hpp 1.0 KB ​ b97a60   14 years FrederikHeber Modified IdPool implementation to give either unique or continuous …
Makefile.am 15.1 KB ​ 004d5c   13 years FrederikHeber Removed JobMarket as it is now in its own repository. - added …
molecule.cpp 37.2 KB ​ 575343   14 years FrederikHeber added OBSERVE to molecule::SetNameFromFilename
molecule.hpp 8.9 KB ​ 5b6a4b7   13 years ankele molecule: RotateToPrincipalAxisSystem only needs a const Vector for axis
molecule_geometry.cpp 17.6 KB ​ 5b6a4b7   13 years ankele molecule: RotateToPrincipalAxisSystem only needs a const Vector for axis
molecule_graph.cpp 13.3 KB ​ 52ed5b   14 years FrederikHeber Ids handed out by molecule now start with 1. - this required some …
MoleculeLeafClass.cpp 9.3 KB ​ 0aa122   14 years FrederikHeber Updated all source files's copyright note to current year 2012.
MoleculeLeafClass.hpp 1.4 KB ​ 07a47e   14 years FrederikHeber Replaced enable/disable-hydrogen by internal switch. - changes in …
moleculelist.cpp 21.1 KB ​ ed26ae   14 years FrederikHeber Renamed calls to element::getNumber() -> ::getAtomicNumber(). - …
MoleculeListClass.hpp 1.4 KB ​ 4d2b33   14 years FrederikHeber FIX: molecule does not need a periodentafel. - removed periodentafel …
poolworker.cpp 542 bytes ​ 004d5c   13 years FrederikHeber Removed JobMarket as it is now in its own repository. - added …
ReMapDBondFileFromXYZ.py 5.9 KB ​ f683fe   17 years neuen Parses a pdb and xyz file and decideds which atoms are in both and …
Server.cpp 529 bytes ​ 004d5c   13 years FrederikHeber Removed JobMarket as it is now in its own repository. - added …
types.hpp 482 bytes ​ 56f73b   15 years FrederikHeber Added config.h also to all header files, code check test ascertain …
version.h 103 bytes ​ 5f8660a   15 years FrederikHeber Changed PACKAGENAME and version. - rename ESPACKVersion in …
World.cpp 22.3 KB ​ 65d7ca   13 years ankele Fix: World::registerAtom() did not notify observers
World.hpp 15.6 KB ​ 992bd5   13 years ankele fixed some typoes in comments
World_calculations.hpp 743 bytes ​ 3139b2   14 years FrederikHeber Renamed ActionTrait and ActionTraits. - the specialized Trait …
WorldTime.cpp 1.6 KB ​ c0ed1e   14 years FrederikHeber FIX: WorldTime::setTime only gives update when given time step is …
WorldTime.hpp 2.0 KB ​ 040a5c   14 years FrederikHeber WorldTime is now Observable. - this is required for the …
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