source: src@ b49568

Action_Thermostats Add_AtomRandomPerturbation Add_FitFragmentPartialChargesAction Add_RotateAroundBondAction Add_SelectAtomByNameAction Added_ParseSaveFragmentResults AddingActions_SaveParseParticleParameters Adding_Graph_to_ChangeBondActions Adding_MD_integration_tests Adding_ParticleName_to_Atom Adding_StructOpt_integration_tests AtomFragments Automaking_mpqc_open AutomationFragmentation_failures Candidate_v1.5.4 Candidate_v1.6.0 Candidate_v1.6.1 ChangeBugEmailaddress ChangingTestPorts ChemicalSpaceEvaluator CombiningParticlePotentialParsing Combining_Subpackages Debian_Package_split Debian_package_split_molecuildergui_only Disabling_MemDebug Docu_Python_wait EmpiricalPotential_contain_HomologyGraph EmpiricalPotential_contain_HomologyGraph_documentation Enable_parallel_make_install Enhance_userguide Enhanced_StructuralOptimization Enhanced_StructuralOptimization_continued Example_ManyWaysToTranslateAtom Exclude_Hydrogens_annealWithBondGraph FitPartialCharges_GlobalError Fix_BoundInBox_CenterInBox_MoleculeActions Fix_ChargeSampling_PBC Fix_ChronosMutex Fix_FitPartialCharges Fix_FitPotential_needs_atomicnumbers Fix_ForceAnnealing Fix_IndependentFragmentGrids Fix_ParseParticles Fix_ParseParticles_split_forward_backward_Actions Fix_PopActions Fix_QtFragmentList_sorted_selection Fix_Restrictedkeyset_FragmentMolecule Fix_StatusMsg Fix_StepWorldTime_single_argument Fix_Verbose_Codepatterns Fix_fitting_potentials Fixes ForceAnnealing_goodresults ForceAnnealing_oldresults ForceAnnealing_tocheck ForceAnnealing_with_BondGraph ForceAnnealing_with_BondGraph_continued ForceAnnealing_with_BondGraph_continued_betteresults ForceAnnealing_with_BondGraph_contraction-expansion FragmentAction_writes_AtomFragments FragmentMolecule_checks_bonddegrees GeometryObjects Gui_Fixes Gui_displays_atomic_force_velocity ImplicitCharges IndependentFragmentGrids IndependentFragmentGrids_IndividualZeroInstances IndependentFragmentGrids_IntegrationTest IndependentFragmentGrids_Sole_NN_Calculation JobMarket_RobustOnKillsSegFaults JobMarket_StableWorkerPool JobMarket_unresolvable_hostname_fix MoreRobust_FragmentAutomation ODR_violation_mpqc_open PartialCharges_OrthogonalSummation PdbParser_setsAtomName PythonUI_with_named_parameters QtGui_reactivate_TimeChanged_changes Recreated_GuiChecks Rewrite_FitPartialCharges RotateToPrincipalAxisSystem_UndoRedo SaturateAtoms_findBestMatching SaturateAtoms_singleDegree StoppableMakroAction Subpackage_CodePatterns Subpackage_JobMarket Subpackage_LinearAlgebra Subpackage_levmar Subpackage_mpqc_open Subpackage_vmg Switchable_LogView ThirdParty_MPQC_rebuilt_buildsystem TrajectoryDependenant_MaxOrder TremoloParser_IncreasedPrecision TremoloParser_MultipleTimesteps TremoloParser_setsAtomName Ubuntu_1604_changes stable
Name Size Rev Age Author Last Change
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unittests d78531   13 years FrederikHeber Library LinkedCell_refactored is now contained in lib LinkedCell.
UIElements 02ce36   13 years FrederikHeber We now require CodePatterns 1.2.0. - this is due to the updated …
Thermostats 6f0841   13 years FrederikHeber Shifted all modules related to atoms into own subfolder src/Atom/ - …
Tesselation 6bd7e0   13 years FrederikHeber Renamed old LinkedCell class to LinkedCell_deprecated. - this is …
Shapes d103d3   13 years FrederikHeber Added additional check in CodeCheck's project disclaimer for current …
RandomNumbers d103d3   13 years FrederikHeber Added additional check in CodeCheck's project disclaimer for current …
Parser 02ce36   13 years FrederikHeber We now require CodePatterns 1.2.0. - this is due to the updated …
LinkedCell d78531   13 years FrederikHeber Library LinkedCell_refactored is now contained in lib LinkedCell.
Helpers d103d3   13 years FrederikHeber Added additional check in CodeCheck's project disclaimer for current …
Graph 6bd7e0   13 years FrederikHeber Renamed old LinkedCell class to LinkedCell_deprecated. - this is …
Fragmentation 6f0841   13 years FrederikHeber Shifted all modules related to atoms into own subfolder src/Atom/ - …
Element d103d3   13 years FrederikHeber Added additional check in CodeCheck's project disclaimer for current …
Dynamics 6f0841   13 years FrederikHeber Shifted all modules related to atoms into own subfolder src/Atom/ - …
documentation b49568   13 years FrederikHeber Added new descriptor AtomOfMolecule. - also added new unit test function.
Descriptors b49568   13 years FrederikHeber Added new descriptor AtomOfMolecule. - also added new unit test function.
Bond 6f0841   13 years FrederikHeber Shifted all modules related to atoms into own subfolder src/Atom/ - …
Atom 97c2550   13 years FrederikHeber Added unit test for AtomObserver. - added position and element …
Analysis 6bd7e0   13 years FrederikHeber Renamed old LinkedCell class to LinkedCell_deprecated. - this is …
Actions 6bd7e0   13 years FrederikHeber Renamed old LinkedCell class to LinkedCell_deprecated. - this is …
WorldTime.hpp 1.9 KB ​ ce7fdc   13 years FrederikHeber HUGE: All Action-related codes resides now in namespace MoleCuilder. …
WorldTime.cpp 777 bytes ​ d103d3   13 years FrederikHeber Added additional check in CodeCheck's project disclaimer for current …
World_calculations.hpp 743 bytes ​ 3139b2   13 years FrederikHeber Renamed ActionTrait and ActionTraits. - the specialized Trait …
World.hpp 15.2 KB ​ 5dfabd   13 years FrederikHeber Added singleton class AtomObserver that acts as relay station to all …
World.cpp 19.1 KB ​ 5dfabd   13 years FrederikHeber Added singleton class AtomObserver that acts as relay station to all …
version.h 103 bytes ​ 5f8660a   15 years FrederikHeber Changed PACKAGENAME and version. - rename ESPACKVersion in …
types.hpp 482 bytes ​ 56f73b   14 years FrederikHeber Added config.h also to all header files, code check test ascertain …
ReMapDBondFileFromXYZ.py 5.9 KB ​ f683fe   16 years neuen Parses a pdb and xyz file and decideds which atoms are in both and …
MoleculeListClass.hpp 1.6 KB ​ 02ce36   13 years FrederikHeber We now require CodePatterns 1.2.0. - this is due to the updated …
moleculelist.cpp 23.1 KB ​ 6f0841   13 years FrederikHeber Shifted all modules related to atoms into own subfolder src/Atom/ - …
MoleculeLeafClass.hpp 1.4 KB ​ 07a47e   13 years FrederikHeber Replaced enable/disable-hydrogen by internal switch. - changes in …
MoleculeLeafClass.cpp 9.3 KB ​ 6f0841   13 years FrederikHeber Shifted all modules related to atoms into own subfolder src/Atom/ - …
molecule_graph.cpp 13.3 KB ​ 6f0841   13 years FrederikHeber Shifted all modules related to atoms into own subfolder src/Atom/ - …
molecule_geometry.cpp 17.5 KB ​ 6f0841   13 years FrederikHeber Shifted all modules related to atoms into own subfolder src/Atom/ - …
molecule.hpp 7.6 KB ​ 6bd7e0   13 years FrederikHeber Renamed old LinkedCell class to LinkedCell_deprecated. - this is …
molecule.cpp 40.4 KB ​ 6f0841   13 years FrederikHeber Shifted all modules related to atoms into own subfolder src/Atom/ - …
Makefile.am 12.4 KB ​ b49568   13 years FrederikHeber Added new descriptor AtomOfMolecule. - also added new unit test function.
IdPool_impl.hpp 3.8 KB ​ 3e4fb6   13 years FrederikHeber Added template class IdPool used by World to manage defragmentable id …
IdPool.hpp 2.5 KB ​ 3e4fb6   13 years FrederikHeber Added template class IdPool used by World to manage defragmentable id …
Formula.hpp 4.1 KB ​ e5c233   13 years FrederikHeber FIX: replaced boost/exception.hpp by boost/exception/all.hpp.
Formula.cpp 14.9 KB ​ d103d3   13 years FrederikHeber Added additional check in CodeCheck's project disclaimer for current …
config.hpp 483 bytes ​ 41a467   13 years FrederikHeber LARGE: config class is now just a tiny container. - this was …
config.cpp 1.1 KB ​ d103d3   13 years FrederikHeber Added additional check in CodeCheck's project disclaimer for current …
cleanUp.hpp 354 bytes ​ 567357   13 years FrederikHeber FIX: cleanUp() replaced by module_reinit() and .._exit() in …
cleanUp.cpp 4.4 KB ​ d103d3   13 years FrederikHeber Added additional check in CodeCheck's project disclaimer for current …
builder_init.hpp 329 bytes ​ b5d38d   13 years FrederikHeber Moved dumpMemory() and saveAll() from module builder_init to cleanUp.
builder_init.cpp 3.9 KB ​ d103d3   13 years FrederikHeber Added additional check in CodeCheck's project disclaimer for current …
builder.cpp 747 bytes ​ d103d3   13 years FrederikHeber Added additional check in CodeCheck's project disclaimer for current …
Box.hpp 3.6 KB ​ de29ad6   13 years FrederikHeber Some optimization to speed up Subgraph dissections. - Replaced …
Box.cpp 8.7 KB ​ 71d81a   13 years FrederikHeber FIX: Box::Box did not initialize Conditions_t with RealSpaceMatrix …
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