source: src/unittests/atomsCalculationTest.cpp@ c6efc1

Action_Thermostats Add_AtomRandomPerturbation Add_FitFragmentPartialChargesAction Add_RotateAroundBondAction Add_SelectAtomByNameAction Added_ParseSaveFragmentResults AddingActions_SaveParseParticleParameters Adding_Graph_to_ChangeBondActions Adding_MD_integration_tests Adding_ParticleName_to_Atom Adding_StructOpt_integration_tests AtomFragments Automaking_mpqc_open AutomationFragmentation_failures Candidate_v1.5.4 Candidate_v1.6.0 Candidate_v1.6.1 ChangeBugEmailaddress ChangingTestPorts ChemicalSpaceEvaluator CombiningParticlePotentialParsing Combining_Subpackages Debian_Package_split Debian_package_split_molecuildergui_only Disabling_MemDebug Docu_Python_wait EmpiricalPotential_contain_HomologyGraph EmpiricalPotential_contain_HomologyGraph_documentation Enable_parallel_make_install Enhance_userguide Enhanced_StructuralOptimization Enhanced_StructuralOptimization_continued Example_ManyWaysToTranslateAtom Exclude_Hydrogens_annealWithBondGraph FitPartialCharges_GlobalError Fix_BoundInBox_CenterInBox_MoleculeActions Fix_ChargeSampling_PBC Fix_ChronosMutex Fix_FitPartialCharges Fix_FitPotential_needs_atomicnumbers Fix_ForceAnnealing Fix_IndependentFragmentGrids Fix_ParseParticles Fix_ParseParticles_split_forward_backward_Actions Fix_PopActions Fix_QtFragmentList_sorted_selection Fix_Restrictedkeyset_FragmentMolecule Fix_StatusMsg Fix_StepWorldTime_single_argument Fix_Verbose_Codepatterns Fix_fitting_potentials Fixes ForceAnnealing_goodresults ForceAnnealing_oldresults ForceAnnealing_tocheck ForceAnnealing_with_BondGraph ForceAnnealing_with_BondGraph_continued ForceAnnealing_with_BondGraph_continued_betteresults ForceAnnealing_with_BondGraph_contraction-expansion FragmentAction_writes_AtomFragments FragmentMolecule_checks_bonddegrees GeometryObjects Gui_Fixes Gui_displays_atomic_force_velocity ImplicitCharges IndependentFragmentGrids IndependentFragmentGrids_IndividualZeroInstances IndependentFragmentGrids_IntegrationTest IndependentFragmentGrids_Sole_NN_Calculation JobMarket_RobustOnKillsSegFaults JobMarket_StableWorkerPool JobMarket_unresolvable_hostname_fix MoreRobust_FragmentAutomation ODR_violation_mpqc_open PartialCharges_OrthogonalSummation PdbParser_setsAtomName PythonUI_with_named_parameters QtGui_reactivate_TimeChanged_changes Recreated_GuiChecks Rewrite_FitPartialCharges RotateToPrincipalAxisSystem_UndoRedo SaturateAtoms_findBestMatching SaturateAtoms_singleDegree StoppableMakroAction Subpackage_CodePatterns Subpackage_JobMarket Subpackage_LinearAlgebra Subpackage_levmar Subpackage_mpqc_open Subpackage_vmg Switchable_LogView ThirdParty_MPQC_rebuilt_buildsystem TrajectoryDependenant_MaxOrder TremoloParser_IncreasedPrecision TremoloParser_MultipleTimesteps TremoloParser_setsAtomName Ubuntu_1604_changes stable
Last change on this file since c6efc1 was 229e3c, checked in by Tillmann Crueger <crueger@…>, 15 years ago

Added custom Assert makro that allows ignoring asserts

  • Property mode set to 100644
File size: 2.7 KB
Line 
1/*
2 * atomsCalculationTest.cpp
3 *
4 * Created on: Feb 19, 2010
5 * Author: crueger
6 */
7
8#include "atomsCalculationTest.hpp"
9
10#include <cppunit/CompilerOutputter.h>
11#include <cppunit/extensions/TestFactoryRegistry.h>
12#include <cppunit/ui/text/TestRunner.h>
13#include <iostream>
14#include <boost/bind.hpp>
15
16#include "Descriptors/AtomDescriptor.hpp"
17#include "Descriptors/AtomIdDescriptor.hpp"
18#include "Actions/AtomsCalculation.hpp"
19#include "Actions/AtomsCalculation_impl.hpp"
20#include "Actions/ActionRegistry.hpp"
21
22#include "World.hpp"
23#include "World_calculations.hpp"
24#include "atom.hpp"
25
26#ifdef HAVE_TESTRUNNER
27#include "UnitTestMain.hpp"
28#endif /*HAVE_TESTRUNNER*/
29
30// Registers the fixture into the 'registry'
31CPPUNIT_TEST_SUITE_REGISTRATION( atomsCalculationTest );
32
33// set up and tear down
34void atomsCalculationTest::setUp(){
35 World::getInstance();
36 for(int i=0;i<ATOM_COUNT;++i){
37 atoms[i]= World::getInstance().createAtom();
38 atomIds[i]= atoms[i]->getId();
39 }
40}
41void atomsCalculationTest::tearDown(){
42 World::purgeInstance();
43 ActionRegistry::purgeInstance();
44}
45
46// some helper functions
47static bool hasAllIds(std::vector<atomId_t> atoms,atomId_t ids[ATOM_COUNT], std::set<atomId_t> excluded = std::set<atomId_t>()){
48 for(int i=0;i<ATOM_COUNT;++i){
49 atomId_t id = ids[i];
50 if(!excluded.count(id)){
51 std::vector<atomId_t>::iterator iter;
52 bool res=false;
53 for(iter=atoms.begin();iter!=atoms.end();++iter){
54 res |= (*iter) == id;
55 }
56 if(!res) {
57 cout << "Atom " << id << " missing in returned list" << endl;
58 return false;
59 }
60 }
61 }
62 return true;
63}
64
65static bool hasNoDuplicates(std::vector<atomId_t> ids){
66 std::set<atomId_t> found;
67 std::vector<atomId_t>::iterator iter;
68 for(iter=ids.begin();iter!=ids.end();++iter){
69 int id = (*iter);
70 if(found.count(id))
71 return false;
72 found.insert(id);
73 }
74 return true;
75}
76
77void atomsCalculationTest::testCalculateSimple(){
78 AtomsCalculation<atomId_t> *calc = World::getInstance().calcOnAtoms<atomId_t>(boost::bind(&atom::getId,_1),"FOO",AllAtoms());
79 std::vector<atomId_t> allIds = (*calc)();
80 CPPUNIT_ASSERT(hasAllIds(allIds,atomIds));
81 CPPUNIT_ASSERT(hasNoDuplicates(allIds));
82}
83
84void atomsCalculationTest::testCalculateExcluded(){
85 atomId_t excluded = atomIds[ATOM_COUNT/2];
86 AtomsCalculation<atomId_t> *calc = World::getInstance().calcOnAtoms<atomId_t>(boost::bind(&atom::getId,_1),"FOO",AllAtoms() && !AtomById(excluded));
87 std::vector<atomId_t> allIds = (*calc)();
88 std::set<atomId_t> excluded_set;
89 excluded_set.insert(excluded);
90 CPPUNIT_ASSERT(hasAllIds(allIds,atomIds,excluded_set));
91 CPPUNIT_ASSERT(hasNoDuplicates(allIds));
92 CPPUNIT_ASSERT_EQUAL((size_t)(ATOM_COUNT-1),allIds.size());
93}
Note: See TracBrowser for help on using the repository browser.