1 | /*
|
---|
2 | * element.hpp
|
---|
3 | *
|
---|
4 | * Created on: Aug 3, 2009
|
---|
5 | * Author: heber
|
---|
6 | */
|
---|
7 |
|
---|
8 | #ifndef ELEMENT_HPP_
|
---|
9 | #define ELEMENT_HPP_
|
---|
10 |
|
---|
11 | /*********************************************** includes ***********************************/
|
---|
12 |
|
---|
13 | // include config.h
|
---|
14 | #ifdef HAVE_CONFIG_H
|
---|
15 | #include <config.h>
|
---|
16 | #endif
|
---|
17 |
|
---|
18 | #include <iosfwd>
|
---|
19 | #include <string>
|
---|
20 |
|
---|
21 | #include "defs.hpp"
|
---|
22 | #include "types.hpp"
|
---|
23 |
|
---|
24 | /********************************************** declarations *******************************/
|
---|
25 |
|
---|
26 | /** Chemical element.
|
---|
27 | * Class incorporates data for a certain chemical element to be referenced from atom class.
|
---|
28 | */
|
---|
29 | class element {
|
---|
30 | enum {strfield_length=7};
|
---|
31 | public:
|
---|
32 | double mass; //!< mass in g/mol
|
---|
33 | double CovalentRadius; //!< covalent radius
|
---|
34 | double VanDerWaalsRadius; //!< can-der-Waals radius
|
---|
35 | int Z; //!< atomic number
|
---|
36 | char period[strfield_length+1]; //!< period: n quantum number
|
---|
37 | char group[strfield_length+1]; //!< group: l quantum number
|
---|
38 | char block[strfield_length+1]; //!< block: l quantum number
|
---|
39 | double Valence; //!< number of valence electrons for this element
|
---|
40 | int NoValenceOrbitals; //!< number of valence orbitals, used for determining bond degree in molecule::CreateConnectmatrix()
|
---|
41 | double HBondDistance[NDIM]; //!< distance in Angstrom of this element to hydrogen (for single, double and triple bonds)
|
---|
42 | double HBondAngle[NDIM]; //!< typical angle for one, two, three bonded hydrogen (in degrees)
|
---|
43 |
|
---|
44 | element();
|
---|
45 | element(const element&);
|
---|
46 | ~element();
|
---|
47 |
|
---|
48 | element &operator=(const element&);
|
---|
49 |
|
---|
50 | // accessor functions
|
---|
51 | atomicNumber_t getNumber() const;
|
---|
52 | std::string &getSymbol();
|
---|
53 | const std::string &getSymbol() const;
|
---|
54 | std::string &getName();
|
---|
55 | const std::string &getName() const;
|
---|
56 |
|
---|
57 | //> print element entries to screen
|
---|
58 | bool Output(std::ostream * const out) const;
|
---|
59 | bool Checkout(std::ostream * const out, const int No, const int NoOfAtoms) const;
|
---|
60 |
|
---|
61 | private:
|
---|
62 | std::string name; //!< atom name, i.e. "Hydrogren"
|
---|
63 | std::string symbol; //!< short form of the atom, i.e. "H"
|
---|
64 | };
|
---|
65 |
|
---|
66 | std::ostream &operator<<(std::ostream&,const element&);
|
---|
67 |
|
---|
68 | #endif /* ELEMENT_HPP_ */
|
---|