Action_Thermostats
Add_AtomRandomPerturbation
Add_FitFragmentPartialChargesAction
Add_RotateAroundBondAction
Add_SelectAtomByNameAction
Added_ParseSaveFragmentResults
AddingActions_SaveParseParticleParameters
Adding_Graph_to_ChangeBondActions
Adding_MD_integration_tests
Adding_ParticleName_to_Atom
Adding_StructOpt_integration_tests
AtomFragments
Automaking_mpqc_open
AutomationFragmentation_failures
Candidate_v1.5.4
Candidate_v1.6.0
Candidate_v1.6.1
ChangeBugEmailaddress
ChangingTestPorts
ChemicalSpaceEvaluator
CombiningParticlePotentialParsing
Combining_Subpackages
Debian_Package_split
Debian_package_split_molecuildergui_only
Disabling_MemDebug
Docu_Python_wait
EmpiricalPotential_contain_HomologyGraph
EmpiricalPotential_contain_HomologyGraph_documentation
Enable_parallel_make_install
Enhance_userguide
Enhanced_StructuralOptimization
Enhanced_StructuralOptimization_continued
Example_ManyWaysToTranslateAtom
Exclude_Hydrogens_annealWithBondGraph
FitPartialCharges_GlobalError
Fix_BoundInBox_CenterInBox_MoleculeActions
Fix_ChargeSampling_PBC
Fix_ChronosMutex
Fix_FitPartialCharges
Fix_FitPotential_needs_atomicnumbers
Fix_ForceAnnealing
Fix_IndependentFragmentGrids
Fix_ParseParticles
Fix_ParseParticles_split_forward_backward_Actions
Fix_PopActions
Fix_QtFragmentList_sorted_selection
Fix_Restrictedkeyset_FragmentMolecule
Fix_StatusMsg
Fix_StepWorldTime_single_argument
Fix_Verbose_Codepatterns
Fix_fitting_potentials
Fixes
ForceAnnealing_goodresults
ForceAnnealing_oldresults
ForceAnnealing_tocheck
ForceAnnealing_with_BondGraph
ForceAnnealing_with_BondGraph_continued
ForceAnnealing_with_BondGraph_continued_betteresults
ForceAnnealing_with_BondGraph_contraction-expansion
FragmentAction_writes_AtomFragments
FragmentMolecule_checks_bonddegrees
GeometryObjects
Gui_Fixes
Gui_displays_atomic_force_velocity
ImplicitCharges
IndependentFragmentGrids
IndependentFragmentGrids_IndividualZeroInstances
IndependentFragmentGrids_IntegrationTest
IndependentFragmentGrids_Sole_NN_Calculation
JobMarket_RobustOnKillsSegFaults
JobMarket_StableWorkerPool
JobMarket_unresolvable_hostname_fix
MoreRobust_FragmentAutomation
ODR_violation_mpqc_open
PartialCharges_OrthogonalSummation
PdbParser_setsAtomName
PythonUI_with_named_parameters
QtGui_reactivate_TimeChanged_changes
Recreated_GuiChecks
Rewrite_FitPartialCharges
RotateToPrincipalAxisSystem_UndoRedo
SaturateAtoms_findBestMatching
SaturateAtoms_singleDegree
StoppableMakroAction
Subpackage_CodePatterns
Subpackage_JobMarket
Subpackage_LinearAlgebra
Subpackage_levmar
Subpackage_mpqc_open
Subpackage_vmg
Switchable_LogView
ThirdParty_MPQC_rebuilt_buildsystem
TrajectoryDependenant_MaxOrder
TremoloParser_IncreasedPrecision
TremoloParser_MultipleTimesteps
TremoloParser_setsAtomName
Ubuntu_1604_changes
stable
Last change
on this file since 8725ed was e138de, checked in by Frederik Heber <heber@…>, 15 years ago |
Huge change from ofstream * (const) out --> Log().
- first shift was done via regular expressions
- then via error messages from the code
- note that class atom, class element and class molecule kept in parts their output stream, was they print to file.
- make check runs fine
- MISSING: Verbosity is not fixed for everything (i.e. if no endl; is present and next has Verbose(0) ...)
Signed-off-by: Frederik Heber <heber@…>
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Property mode
set to
100644
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File size:
1.9 KB
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1 | /*
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2 | * element.hpp
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3 | *
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4 | * Created on: Aug 3, 2009
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5 | * Author: heber
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6 | */
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7 |
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8 | #ifndef ELEMENT_HPP_
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9 | #define ELEMENT_HPP_
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10 |
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11 | using namespace std;
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12 |
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13 | /*********************************************** includes ***********************************/
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14 |
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15 | // include config.h
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16 | #ifdef HAVE_CONFIG_H
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17 | #include <config.h>
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18 | #endif
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19 |
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20 | #include <iostream>
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21 |
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22 | #include "defs.hpp"
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23 |
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24 | /********************************************** declarations *******************************/
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25 |
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26 | /** Chemical element.
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27 | * Class incorporates data for a certain chemical element to be referenced from atom class.
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28 | */
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29 | class element {
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30 | public:
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31 | double mass; //!< mass in g/mol
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32 | double CovalentRadius; //!< covalent radius
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33 | double VanDerWaalsRadius; //!< can-der-Waals radius
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34 | int Z; //!< atomic number
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35 | char name[64]; //!< atom name, i.e. "Hydrogren"
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36 | char symbol[3]; //!< short form of the atom, i.e. "H"
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37 | char period[8]; //!< period: n quantum number
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38 | char group[8]; //!< group: l quantum number
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39 | char block[8]; //!< block: l quantum number
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40 | element *previous; //!< previous item in list
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41 | element *next; //!< next element in list
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42 | int *sort; //!< sorc criteria
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43 | int No; //!< number of element set on periodentafel::Output()
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44 | double Valence; //!< number of valence electrons for this element
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45 | int NoValenceOrbitals; //!< number of valence orbitals, used for determining bond degree in molecule::CreateConnectmatrix()
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46 | double HBondDistance[NDIM]; //!< distance in Angstrom of this element to hydrogen (for single, double and triple bonds)
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47 | double HBondAngle[NDIM]; //!< typical angle for one, two, three bonded hydrogen (in degrees)
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48 |
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49 | element();
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50 | ~element();
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51 |
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52 | //> print element entries to screen
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53 | bool Output(ofstream * const out) const;
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54 | bool Checkout(ofstream * const out, const int No, const int NoOfAtoms) const;
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55 |
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56 | private:
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57 | };
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58 |
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59 |
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60 | #endif /* ELEMENT_HPP_ */
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