| 1 | /* | 
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| 2 | * element.hpp | 
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| 3 | * | 
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| 4 | *  Created on: Aug 3, 2009 | 
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| 5 | *      Author: heber | 
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| 6 | */ | 
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| 7 |  | 
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| 8 | #ifndef ELEMENT_HPP_ | 
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| 9 | #define ELEMENT_HPP_ | 
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| 10 |  | 
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| 11 | /*********************************************** includes ***********************************/ | 
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| 12 |  | 
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| 13 | // include config.h | 
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| 14 | #ifdef HAVE_CONFIG_H | 
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| 15 | #include <config.h> | 
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| 16 | #endif | 
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| 17 |  | 
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| 18 | #include <iosfwd> | 
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| 19 | #include <string> | 
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| 20 |  | 
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| 21 | #include "Helpers/defs.hpp" | 
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| 22 | #include "types.hpp" | 
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| 23 |  | 
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| 24 | class periodentafel; | 
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| 25 |  | 
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| 26 | /********************************************** declarations *******************************/ | 
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| 27 |  | 
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| 28 | /** Chemical element. | 
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| 29 | * Class incorporates data for a certain chemical element to be referenced from atom class. | 
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| 30 | */ | 
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| 31 | class element { | 
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| 32 | friend class periodentafel; | 
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| 33 | public: | 
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| 34 | element(); | 
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| 35 | element(const element&); | 
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| 36 | ~element(); | 
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| 37 |  | 
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| 38 | element &operator=(const element&); | 
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| 39 |  | 
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| 40 | // accessor functions | 
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| 41 | atomicNumber_t getNumber() const; | 
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| 42 | double getMass() const; | 
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| 43 | double getCovalentRadius() const; | 
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| 44 | double getElectronegativity() const; | 
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| 45 | double getVanDerWaalsRadius() const; | 
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| 46 | int getAtomicNumber() const; | 
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| 47 | double getValence() const; | 
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| 48 | int getNoValenceOrbitals() const; | 
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| 49 | double getHBondDistance(const int i) const; | 
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| 50 | double getHBondAngle(const int i) const; | 
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| 51 |  | 
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| 52 | std::string &getSymbol(); | 
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| 53 | const std::string &getSymbol() const; | 
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| 54 | void setSymbol(const std::string &temp); | 
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| 55 |  | 
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| 56 | std::string &getName(); | 
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| 57 | const std::string &getName() const; | 
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| 58 | void setName(const std::string &temp); | 
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| 59 |  | 
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| 60 | //> print element entries to screen | 
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| 61 | bool Output(std::ostream * const out) const; | 
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| 62 | bool Checkout(std::ostream * const out, const int No, const int NoOfAtoms) const; | 
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| 63 |  | 
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| 64 | private: | 
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| 65 | double mass;    //!< mass in g/mol | 
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| 66 | double CovalentRadius;  //!< covalent radius | 
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| 67 | double Electronegativity; //!< electronegativity in Pauling units | 
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| 68 | double VanDerWaalsRadius;  //!< can-der-Waals radius | 
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| 69 | int Z;          //!< atomic number | 
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| 70 | std::string period;    //!< period: n quantum number | 
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| 71 | std::string group;    //!< group: l quantum number | 
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| 72 | std::string block;    //!< block: l quantum number | 
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| 73 | double Valence;   //!< number of valence electrons for this element | 
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| 74 | int NoValenceOrbitals;  //!< number of valence orbitals, used for determining bond degree in molecule::CreateConnectmatrix() | 
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| 75 | double HBondDistance[NDIM]; //!< distance in Angstrom of this element to hydrogen  (for single, double and triple bonds) | 
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| 76 | double HBondAngle[NDIM];     //!< typical angle for one, two, three bonded hydrogen (in degrees) | 
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| 77 |  | 
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| 78 | std::string name;  //!< atom name, i.e. "Hydrogen" | 
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| 79 | std::string symbol; //!< short form of the atom, i.e. "H" | 
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| 80 | }; | 
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| 81 |  | 
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| 82 | std::ostream &operator<<(std::ostream&,const element&); | 
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| 83 |  | 
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| 84 | #endif /* ELEMENT_HPP_ */ | 
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