Action_Thermostats
        Add_AtomRandomPerturbation
        Add_FitFragmentPartialChargesAction
        Add_RotateAroundBondAction
        Add_SelectAtomByNameAction
        Added_ParseSaveFragmentResults
        AddingActions_SaveParseParticleParameters
        Adding_Graph_to_ChangeBondActions
        Adding_MD_integration_tests
        Adding_ParticleName_to_Atom
        Adding_StructOpt_integration_tests
        AtomFragments
        Automaking_mpqc_open
        AutomationFragmentation_failures
        Candidate_v1.5.4
        Candidate_v1.6.0
        Candidate_v1.6.1
        Candidate_v1.7.0
        ChangeBugEmailaddress
        ChangingTestPorts
        ChemicalSpaceEvaluator
        CombiningParticlePotentialParsing
        Combining_Subpackages
        Debian_Package_split
        Debian_package_split_molecuildergui_only
        Disabling_MemDebug
        Docu_Python_wait
        EmpiricalPotential_contain_HomologyGraph
        EmpiricalPotential_contain_HomologyGraph_documentation
        Enable_parallel_make_install
        Enhance_userguide
        Enhanced_StructuralOptimization
        Enhanced_StructuralOptimization_continued
        Example_ManyWaysToTranslateAtom
        Exclude_Hydrogens_annealWithBondGraph
        FitPartialCharges_GlobalError
        Fix_BoundInBox_CenterInBox_MoleculeActions
        Fix_ChargeSampling_PBC
        Fix_ChronosMutex
        Fix_FitPartialCharges
        Fix_FitPotential_needs_atomicnumbers
        Fix_ForceAnnealing
        Fix_IndependentFragmentGrids
        Fix_ParseParticles
        Fix_ParseParticles_split_forward_backward_Actions
        Fix_PopActions
        Fix_QtFragmentList_sorted_selection
        Fix_Restrictedkeyset_FragmentMolecule
        Fix_StatusMsg
        Fix_StepWorldTime_single_argument
        Fix_Verbose_Codepatterns
        Fix_fitting_potentials
        Fixes
        ForceAnnealing_goodresults
        ForceAnnealing_oldresults
        ForceAnnealing_tocheck
        ForceAnnealing_with_BondGraph
        ForceAnnealing_with_BondGraph_continued
        ForceAnnealing_with_BondGraph_continued_betteresults
        ForceAnnealing_with_BondGraph_contraction-expansion
        FragmentAction_writes_AtomFragments
        FragmentMolecule_checks_bonddegrees
        GeometryObjects
        Gui_Fixes
        Gui_displays_atomic_force_velocity
        ImplicitCharges
        IndependentFragmentGrids
        IndependentFragmentGrids_IndividualZeroInstances
        IndependentFragmentGrids_IntegrationTest
        IndependentFragmentGrids_Sole_NN_Calculation
        JobMarket_RobustOnKillsSegFaults
        JobMarket_StableWorkerPool
        JobMarket_unresolvable_hostname_fix
        MoreRobust_FragmentAutomation
        ODR_violation_mpqc_open
        PartialCharges_OrthogonalSummation
        PdbParser_setsAtomName
        PythonUI_with_named_parameters
        QtGui_reactivate_TimeChanged_changes
        Recreated_GuiChecks
        Rewrite_FitPartialCharges
        RotateToPrincipalAxisSystem_UndoRedo
        SaturateAtoms_findBestMatching
        SaturateAtoms_singleDegree
        StoppableMakroAction
        Subpackage_CodePatterns
        Subpackage_JobMarket
        Subpackage_LinearAlgebra
        Subpackage_levmar
        Subpackage_mpqc_open
        Subpackage_vmg
        Switchable_LogView
        ThirdParty_MPQC_rebuilt_buildsystem
        TrajectoryDependenant_MaxOrder
        TremoloParser_IncreasedPrecision
        TremoloParser_MultipleTimesteps
        TremoloParser_setsAtomName
        Ubuntu_1604_changes
        stable
      
      
        
          | 
            Last change
 on this file since 87b597 was             ead4e6, checked in by Tillmann Crueger <crueger@…>, 16 years ago           | 
        
        
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Made the periodentafel use STL-containers instead of custom llists 
 
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          | 
            File size:
            2.0 KB
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| Rev | Line |   | 
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| [cd4ccc] | 1 | /*
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 | 2 |  * element.hpp
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 | 3 |  *
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 | 4 |  *  Created on: Aug 3, 2009
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 | 5 |  *      Author: heber
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 | 6 |  */
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 | 7 | 
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 | 8 | #ifndef ELEMENT_HPP_
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 | 9 | #define ELEMENT_HPP_
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 | 10 | 
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| [f66195] | 11 | /*********************************************** includes ***********************************/
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 | 12 | 
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| [cd4ccc] | 13 | // include config.h
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 | 14 | #ifdef HAVE_CONFIG_H
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 | 15 | #include <config.h>
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 | 16 | #endif
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 | 17 | 
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 | 18 | #include <iostream>
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| [ead4e6] | 19 | #include <string>
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| [cd4ccc] | 20 | 
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 | 21 | #include "defs.hpp"
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| [ead4e6] | 22 | #include "types.hpp"
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| [cd4ccc] | 23 | 
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| [f66195] | 24 | /********************************************** declarations *******************************/
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 | 25 | 
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| [cd4ccc] | 26 | /** Chemical element.
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 | 27 |  * Class incorporates data for a certain chemical element to be referenced from atom class.
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 | 28 |  */
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 | 29 | class element {
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 | 30 |   public:
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 | 31 |     double mass;    //!< mass in g/mol
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 | 32 |     double CovalentRadius;  //!< covalent radius
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 | 33 |     double VanDerWaalsRadius;  //!< can-der-Waals radius
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 | 34 |     int Z;          //!< atomic number
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 | 35 |     char name[64];  //!< atom name, i.e. "Hydrogren"
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 | 36 |     char symbol[3]; //!< short form of the atom, i.e. "H"
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 | 37 |     char period[8];    //!< period: n quantum number
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 | 38 |     char group[8];    //!< group: l quantum number
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 | 39 |     char block[8];    //!< block: l quantum number
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 | 40 |     element *previous;  //!< previous item in list
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 | 41 |     element *next;  //!< next element in list
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 | 42 |     int *sort;      //!< sorc criteria
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 | 43 |     int No;         //!< number of element set on periodentafel::Output()
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 | 44 |     double Valence;   //!< number of valence electrons for this element
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 | 45 |     int NoValenceOrbitals;  //!< number of valence orbitals, used for determining bond degree in molecule::CreateConnectmatrix()
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 | 46 |     double HBondDistance[NDIM]; //!< distance in Angstrom of this element to hydrogen  (for single, double and triple bonds)
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 | 47 |     double HBondAngle[NDIM];     //!< typical angle for one, two, three bonded hydrogen (in degrees)
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 | 48 | 
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 | 49 |   element();
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 | 50 |   ~element();
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 | 51 | 
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| [ead4e6] | 52 |   // accessor functions
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 | 53 |   atomicNumber_t getNumber() const;
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 | 54 |   std::string getSymbol() const;
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 | 55 | 
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| [cd4ccc] | 56 |   //> print element entries to screen
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| [ead4e6] | 57 |   bool Output(std::ostream * const out) const;
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 | 58 |   bool Checkout(std::ostream * const out, const int No, const int NoOfAtoms) const;
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| [cd4ccc] | 59 | 
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 | 60 |   private:
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 | 61 | };
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 | 62 | 
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 | 63 | 
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 | 64 | #endif /* ELEMENT_HPP_ */
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