| [cd4ccc] | 1 | /* | 
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|  | 2 | * element.hpp | 
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|  | 3 | * | 
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|  | 4 | *  Created on: Aug 3, 2009 | 
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|  | 5 | *      Author: heber | 
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|  | 6 | */ | 
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|  | 7 |  | 
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|  | 8 | #ifndef ELEMENT_HPP_ | 
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|  | 9 | #define ELEMENT_HPP_ | 
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|  | 10 |  | 
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| [f66195] | 11 | /*********************************************** includes ***********************************/ | 
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|  | 12 |  | 
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| [cd4ccc] | 13 | // include config.h | 
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|  | 14 | #ifdef HAVE_CONFIG_H | 
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|  | 15 | #include <config.h> | 
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|  | 16 | #endif | 
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|  | 17 |  | 
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| [986ed3] | 18 | #include <iosfwd> | 
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| [ead4e6] | 19 | #include <string> | 
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| [cd4ccc] | 20 |  | 
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|  | 21 | #include "defs.hpp" | 
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| [ead4e6] | 22 | #include "types.hpp" | 
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| [cd4ccc] | 23 |  | 
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| [f66195] | 24 | /********************************************** declarations *******************************/ | 
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|  | 25 |  | 
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| [cd4ccc] | 26 | /** Chemical element. | 
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|  | 27 | * Class incorporates data for a certain chemical element to be referenced from atom class. | 
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|  | 28 | */ | 
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|  | 29 | class element { | 
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| [2a76b0] | 30 | enum {strfield_length=7}; | 
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| [cd4ccc] | 31 | public: | 
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|  | 32 | double mass;    //!< mass in g/mol | 
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|  | 33 | double CovalentRadius;  //!< covalent radius | 
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|  | 34 | double VanDerWaalsRadius;  //!< can-der-Waals radius | 
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|  | 35 | int Z;          //!< atomic number | 
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| [2a76b0] | 36 | char period[strfield_length+1];    //!< period: n quantum number | 
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|  | 37 | char group[strfield_length+1];    //!< group: l quantum number | 
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|  | 38 | char block[strfield_length+1];    //!< block: l quantum number | 
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| [cd4ccc] | 39 | double Valence;   //!< number of valence electrons for this element | 
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|  | 40 | int NoValenceOrbitals;  //!< number of valence orbitals, used for determining bond degree in molecule::CreateConnectmatrix() | 
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|  | 41 | double HBondDistance[NDIM]; //!< distance in Angstrom of this element to hydrogen  (for single, double and triple bonds) | 
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|  | 42 | double HBondAngle[NDIM];     //!< typical angle for one, two, three bonded hydrogen (in degrees) | 
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|  | 43 |  | 
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| [2fe971] | 44 | element(); | 
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| [2a76b0] | 45 | element(const element&); | 
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| [2fe971] | 46 | ~element(); | 
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| [cd4ccc] | 47 |  | 
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| [2a76b0] | 48 | element &operator=(const element&); | 
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|  | 49 |  | 
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| [2fe971] | 50 | // accessor functions | 
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|  | 51 | atomicNumber_t getNumber() const; | 
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| [7e3fc94] | 52 | std::string &getSymbol(); | 
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|  | 53 | const std::string &getSymbol() const; | 
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|  | 54 | std::string &getName(); | 
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|  | 55 | const std::string &getName() const; | 
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| [ead4e6] | 56 |  | 
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| [2fe971] | 57 | //> print element entries to screen | 
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|  | 58 | bool Output(std::ostream * const out) const; | 
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|  | 59 | bool Checkout(std::ostream * const out, const int No, const int NoOfAtoms) const; | 
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| [cd4ccc] | 60 |  | 
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|  | 61 | private: | 
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| [7e3fc94] | 62 | std::string name;  //!< atom name, i.e. "Hydrogren" | 
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|  | 63 | std::string symbol; //!< short form of the atom, i.e. "H" | 
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| [cd4ccc] | 64 | }; | 
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|  | 65 |  | 
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| [e345e3] | 66 | std::ostream &operator<<(std::ostream&,const element&); | 
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| [cd4ccc] | 67 |  | 
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|  | 68 | #endif /* ELEMENT_HPP_ */ | 
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