Action_Thermostats
Add_AtomRandomPerturbation
Add_FitFragmentPartialChargesAction
Add_RotateAroundBondAction
Add_SelectAtomByNameAction
Added_ParseSaveFragmentResults
AddingActions_SaveParseParticleParameters
Adding_Graph_to_ChangeBondActions
Adding_MD_integration_tests
Adding_ParticleName_to_Atom
Adding_StructOpt_integration_tests
AtomFragments
Automaking_mpqc_open
AutomationFragmentation_failures
Candidate_v1.5.4
Candidate_v1.6.0
Candidate_v1.6.1
ChangeBugEmailaddress
ChangingTestPorts
ChemicalSpaceEvaluator
CombiningParticlePotentialParsing
Combining_Subpackages
Debian_Package_split
Debian_package_split_molecuildergui_only
Disabling_MemDebug
Docu_Python_wait
EmpiricalPotential_contain_HomologyGraph
EmpiricalPotential_contain_HomologyGraph_documentation
Enable_parallel_make_install
Enhance_userguide
Enhanced_StructuralOptimization
Enhanced_StructuralOptimization_continued
Example_ManyWaysToTranslateAtom
Exclude_Hydrogens_annealWithBondGraph
FitPartialCharges_GlobalError
Fix_BoundInBox_CenterInBox_MoleculeActions
Fix_ChargeSampling_PBC
Fix_ChronosMutex
Fix_FitPartialCharges
Fix_FitPotential_needs_atomicnumbers
Fix_ForceAnnealing
Fix_IndependentFragmentGrids
Fix_ParseParticles
Fix_ParseParticles_split_forward_backward_Actions
Fix_PopActions
Fix_QtFragmentList_sorted_selection
Fix_Restrictedkeyset_FragmentMolecule
Fix_StatusMsg
Fix_StepWorldTime_single_argument
Fix_Verbose_Codepatterns
Fix_fitting_potentials
Fixes
ForceAnnealing_goodresults
ForceAnnealing_oldresults
ForceAnnealing_tocheck
ForceAnnealing_with_BondGraph
ForceAnnealing_with_BondGraph_continued
ForceAnnealing_with_BondGraph_continued_betteresults
ForceAnnealing_with_BondGraph_contraction-expansion
FragmentAction_writes_AtomFragments
FragmentMolecule_checks_bonddegrees
GeometryObjects
Gui_Fixes
Gui_displays_atomic_force_velocity
ImplicitCharges
IndependentFragmentGrids
IndependentFragmentGrids_IndividualZeroInstances
IndependentFragmentGrids_IntegrationTest
IndependentFragmentGrids_Sole_NN_Calculation
JobMarket_RobustOnKillsSegFaults
JobMarket_StableWorkerPool
JobMarket_unresolvable_hostname_fix
MoreRobust_FragmentAutomation
ODR_violation_mpqc_open
PartialCharges_OrthogonalSummation
PdbParser_setsAtomName
PythonUI_with_named_parameters
QtGui_reactivate_TimeChanged_changes
Recreated_GuiChecks
Rewrite_FitPartialCharges
RotateToPrincipalAxisSystem_UndoRedo
SaturateAtoms_findBestMatching
SaturateAtoms_singleDegree
StoppableMakroAction
Subpackage_CodePatterns
Subpackage_JobMarket
Subpackage_LinearAlgebra
Subpackage_levmar
Subpackage_mpqc_open
Subpackage_vmg
Switchable_LogView
ThirdParty_MPQC_rebuilt_buildsystem
TrajectoryDependenant_MaxOrder
TremoloParser_IncreasedPrecision
TremoloParser_MultipleTimesteps
TremoloParser_setsAtomName
Ubuntu_1604_changes
stable
Last change
on this file since 18eecf was ead4e6, checked in by Tillmann Crueger <crueger@…>, 15 years ago |
Made the periodentafel use STL-containers instead of custom llists
|
-
Property mode
set to
100644
|
File size:
2.0 KB
|
Rev | Line | |
---|
[cd4ccc] | 1 | /*
|
---|
| 2 | * element.hpp
|
---|
| 3 | *
|
---|
| 4 | * Created on: Aug 3, 2009
|
---|
| 5 | * Author: heber
|
---|
| 6 | */
|
---|
| 7 |
|
---|
| 8 | #ifndef ELEMENT_HPP_
|
---|
| 9 | #define ELEMENT_HPP_
|
---|
| 10 |
|
---|
[f66195] | 11 | /*********************************************** includes ***********************************/
|
---|
| 12 |
|
---|
[cd4ccc] | 13 | // include config.h
|
---|
| 14 | #ifdef HAVE_CONFIG_H
|
---|
| 15 | #include <config.h>
|
---|
| 16 | #endif
|
---|
| 17 |
|
---|
| 18 | #include <iostream>
|
---|
[ead4e6] | 19 | #include <string>
|
---|
[cd4ccc] | 20 |
|
---|
| 21 | #include "defs.hpp"
|
---|
[ead4e6] | 22 | #include "types.hpp"
|
---|
[cd4ccc] | 23 |
|
---|
[f66195] | 24 | /********************************************** declarations *******************************/
|
---|
| 25 |
|
---|
[cd4ccc] | 26 | /** Chemical element.
|
---|
| 27 | * Class incorporates data for a certain chemical element to be referenced from atom class.
|
---|
| 28 | */
|
---|
| 29 | class element {
|
---|
| 30 | public:
|
---|
| 31 | double mass; //!< mass in g/mol
|
---|
| 32 | double CovalentRadius; //!< covalent radius
|
---|
| 33 | double VanDerWaalsRadius; //!< can-der-Waals radius
|
---|
| 34 | int Z; //!< atomic number
|
---|
| 35 | char name[64]; //!< atom name, i.e. "Hydrogren"
|
---|
| 36 | char symbol[3]; //!< short form of the atom, i.e. "H"
|
---|
| 37 | char period[8]; //!< period: n quantum number
|
---|
| 38 | char group[8]; //!< group: l quantum number
|
---|
| 39 | char block[8]; //!< block: l quantum number
|
---|
| 40 | element *previous; //!< previous item in list
|
---|
| 41 | element *next; //!< next element in list
|
---|
| 42 | int *sort; //!< sorc criteria
|
---|
| 43 | int No; //!< number of element set on periodentafel::Output()
|
---|
| 44 | double Valence; //!< number of valence electrons for this element
|
---|
| 45 | int NoValenceOrbitals; //!< number of valence orbitals, used for determining bond degree in molecule::CreateConnectmatrix()
|
---|
| 46 | double HBondDistance[NDIM]; //!< distance in Angstrom of this element to hydrogen (for single, double and triple bonds)
|
---|
| 47 | double HBondAngle[NDIM]; //!< typical angle for one, two, three bonded hydrogen (in degrees)
|
---|
| 48 |
|
---|
| 49 | element();
|
---|
| 50 | ~element();
|
---|
| 51 |
|
---|
[ead4e6] | 52 | // accessor functions
|
---|
| 53 | atomicNumber_t getNumber() const;
|
---|
| 54 | std::string getSymbol() const;
|
---|
| 55 |
|
---|
[cd4ccc] | 56 | //> print element entries to screen
|
---|
[ead4e6] | 57 | bool Output(std::ostream * const out) const;
|
---|
| 58 | bool Checkout(std::ostream * const out, const int No, const int NoOfAtoms) const;
|
---|
[cd4ccc] | 59 |
|
---|
| 60 | private:
|
---|
| 61 | };
|
---|
| 62 |
|
---|
| 63 |
|
---|
| 64 | #endif /* ELEMENT_HPP_ */
|
---|
Note:
See
TracBrowser
for help on using the repository browser.