Action_Thermostats
Add_AtomRandomPerturbation
Add_FitFragmentPartialChargesAction
Add_RotateAroundBondAction
Add_SelectAtomByNameAction
Added_ParseSaveFragmentResults
AddingActions_SaveParseParticleParameters
Adding_Graph_to_ChangeBondActions
Adding_MD_integration_tests
Adding_ParticleName_to_Atom
Adding_StructOpt_integration_tests
AtomFragments
Automaking_mpqc_open
AutomationFragmentation_failures
Candidate_v1.5.4
Candidate_v1.6.0
Candidate_v1.6.1
ChangeBugEmailaddress
ChangingTestPorts
ChemicalSpaceEvaluator
CombiningParticlePotentialParsing
Combining_Subpackages
Debian_Package_split
Debian_package_split_molecuildergui_only
Disabling_MemDebug
Docu_Python_wait
EmpiricalPotential_contain_HomologyGraph
EmpiricalPotential_contain_HomologyGraph_documentation
Enable_parallel_make_install
Enhance_userguide
Enhanced_StructuralOptimization
Enhanced_StructuralOptimization_continued
Example_ManyWaysToTranslateAtom
Exclude_Hydrogens_annealWithBondGraph
FitPartialCharges_GlobalError
Fix_BoundInBox_CenterInBox_MoleculeActions
Fix_ChargeSampling_PBC
Fix_ChronosMutex
Fix_FitPartialCharges
Fix_FitPotential_needs_atomicnumbers
Fix_ForceAnnealing
Fix_IndependentFragmentGrids
Fix_ParseParticles
Fix_ParseParticles_split_forward_backward_Actions
Fix_PopActions
Fix_QtFragmentList_sorted_selection
Fix_Restrictedkeyset_FragmentMolecule
Fix_StatusMsg
Fix_StepWorldTime_single_argument
Fix_Verbose_Codepatterns
Fix_fitting_potentials
Fixes
ForceAnnealing_goodresults
ForceAnnealing_oldresults
ForceAnnealing_tocheck
ForceAnnealing_with_BondGraph
ForceAnnealing_with_BondGraph_continued
ForceAnnealing_with_BondGraph_continued_betteresults
ForceAnnealing_with_BondGraph_contraction-expansion
FragmentAction_writes_AtomFragments
FragmentMolecule_checks_bonddegrees
GeometryObjects
Gui_Fixes
Gui_displays_atomic_force_velocity
ImplicitCharges
IndependentFragmentGrids
IndependentFragmentGrids_IndividualZeroInstances
IndependentFragmentGrids_IntegrationTest
IndependentFragmentGrids_Sole_NN_Calculation
JobMarket_RobustOnKillsSegFaults
JobMarket_StableWorkerPool
JobMarket_unresolvable_hostname_fix
MoreRobust_FragmentAutomation
ODR_violation_mpqc_open
PartialCharges_OrthogonalSummation
PdbParser_setsAtomName
PythonUI_with_named_parameters
QtGui_reactivate_TimeChanged_changes
Recreated_GuiChecks
Rewrite_FitPartialCharges
RotateToPrincipalAxisSystem_UndoRedo
SaturateAtoms_findBestMatching
SaturateAtoms_singleDegree
StoppableMakroAction
Subpackage_CodePatterns
Subpackage_JobMarket
Subpackage_LinearAlgebra
Subpackage_levmar
Subpackage_mpqc_open
Subpackage_vmg
Switchable_LogView
ThirdParty_MPQC_rebuilt_buildsystem
TrajectoryDependenant_MaxOrder
TremoloParser_IncreasedPrecision
TremoloParser_MultipleTimesteps
TremoloParser_setsAtomName
Ubuntu_1604_changes
stable
Last change
on this file since 9cd807 was ae959a, checked in by Frederik Heber <heber@…>, 15 years ago |
element::group, period, block converted from char[] to std::string.
- came up as test_all.sh showed strncpy to as undefined reference on -O1.
|
-
Property mode
set to
100755
|
File size:
2.8 KB
|
Rev | Line | |
---|
[14de469] | 1 | /** \file element.cpp
|
---|
| 2 | *
|
---|
| 3 | * Function implementations for the class element.
|
---|
| 4 | *
|
---|
| 5 | */
|
---|
| 6 |
|
---|
[bf3817] | 7 | // include config.h
|
---|
| 8 | #ifdef HAVE_CONFIG_H
|
---|
| 9 | #include <config.h>
|
---|
| 10 | #endif
|
---|
| 11 |
|
---|
[112b09] | 12 | #include "Helpers/MemDebug.hpp"
|
---|
| 13 |
|
---|
[cd4ccc] | 14 | #include <iomanip>
|
---|
| 15 | #include <fstream>
|
---|
| 16 |
|
---|
| 17 | #include "element.hpp"
|
---|
[14de469] | 18 |
|
---|
[ead4e6] | 19 | using namespace std;
|
---|
| 20 |
|
---|
[14de469] | 21 | /************************************* Functions for class element **********************************/
|
---|
| 22 |
|
---|
| 23 | /** Constructor of class element.
|
---|
| 24 | */
|
---|
[d5af3e] | 25 | element::element() :
|
---|
| 26 | mass(0),
|
---|
| 27 | CovalentRadius(0),
|
---|
| 28 | VanDerWaalsRadius(0),
|
---|
| 29 | Z(-1),
|
---|
| 30 | Valence(0),
|
---|
| 31 | NoValenceOrbitals(0)
|
---|
| 32 | {
|
---|
[27c6be] | 33 | };
|
---|
[14de469] | 34 |
|
---|
[2a76b0] | 35 | element::element(const element &src) :
|
---|
| 36 | mass(src.mass),
|
---|
| 37 | CovalentRadius(src.CovalentRadius),
|
---|
| 38 | VanDerWaalsRadius(src.VanDerWaalsRadius),
|
---|
| 39 | Z(src.Z),
|
---|
| 40 | Valence(src.Valence),
|
---|
| 41 | NoValenceOrbitals(src.NoValenceOrbitals),
|
---|
| 42 | name(src.name),
|
---|
| 43 | symbol(src.symbol)
|
---|
| 44 | {
|
---|
[ae959a] | 45 | period = src.period;
|
---|
| 46 | group = src.group;
|
---|
| 47 | block = src.block;
|
---|
[2a76b0] | 48 | }
|
---|
| 49 |
|
---|
[14de469] | 50 | /** Destructor of class element.
|
---|
| 51 | */
|
---|
| 52 | element::~element() {};
|
---|
| 53 |
|
---|
[2a76b0] | 54 | element &element::operator=(const element &src){
|
---|
| 55 | if(this!=&src){
|
---|
| 56 | mass=src.mass;
|
---|
| 57 | CovalentRadius=src.CovalentRadius;
|
---|
| 58 | VanDerWaalsRadius=src.VanDerWaalsRadius;
|
---|
| 59 | Z=src.Z;
|
---|
| 60 | Valence=src.Valence;
|
---|
| 61 | NoValenceOrbitals=src.NoValenceOrbitals;
|
---|
| 62 | name=src.name;
|
---|
| 63 | symbol=src.symbol;
|
---|
[ae959a] | 64 | period = src.period;
|
---|
| 65 | group = src.group;
|
---|
| 66 | block = src.block;
|
---|
[2a76b0] | 67 | }
|
---|
| 68 | return *this;
|
---|
| 69 | }
|
---|
| 70 |
|
---|
[14de469] | 71 | /** Prints element data to \a *out.
|
---|
| 72 | * \param *out outstream
|
---|
| 73 | */
|
---|
[ead4e6] | 74 | bool element::Output(ostream * const out) const
|
---|
[14de469] | 75 | {
|
---|
[042f82] | 76 | if (out != NULL) {
|
---|
| 77 | *out << name << "\t" << symbol << "\t" << period << "\t" << group << "\t" << block << "\t" << Z << "\t" << mass << "\t" << CovalentRadius << "\t" << VanDerWaalsRadius << endl;
|
---|
| 78 | //*out << Z << "\t" << fixed << setprecision(11) << showpoint << mass << "g/mol\t" << name << "\t" << symbol << "\t" << endl;
|
---|
| 79 | return true;
|
---|
| 80 | } else
|
---|
| 81 | return false;
|
---|
[14de469] | 82 | };
|
---|
| 83 |
|
---|
| 84 | /** Prints element data to \a *out.
|
---|
| 85 | * \param *out outstream
|
---|
[042f82] | 86 | * \param No cardinal number of element
|
---|
[14de469] | 87 | * \param NoOfAtoms total number of atom of this element type
|
---|
| 88 | */
|
---|
[ead4e6] | 89 | bool element::Checkout(ostream * const out, const int Number, const int NoOfAtoms) const
|
---|
[14de469] | 90 | {
|
---|
[042f82] | 91 | if (out != NULL) {
|
---|
| 92 | *out << "Ion_Type" << Number << "\t" << NoOfAtoms << "\t" << Z << "\t1.0\t3\t3\t" << fixed << setprecision(11) << showpoint << mass << "\t" << name << "\t" << symbol <<endl;
|
---|
| 93 | return true;
|
---|
| 94 | } else
|
---|
| 95 | return false;
|
---|
[14de469] | 96 | };
|
---|
[ead4e6] | 97 |
|
---|
| 98 | atomicNumber_t element::getNumber() const{
|
---|
| 99 | return Z;
|
---|
| 100 | }
|
---|
| 101 |
|
---|
[7e3fc94] | 102 | string &element::getSymbol(){
|
---|
| 103 | return symbol;
|
---|
[ead4e6] | 104 | }
|
---|
[e345e3] | 105 |
|
---|
[7e3fc94] | 106 | const string &element::getSymbol() const{
|
---|
| 107 | return symbol;
|
---|
[ff6a10] | 108 | }
|
---|
| 109 |
|
---|
[7e3fc94] | 110 | std::string &element::getName(){
|
---|
| 111 | return name;
|
---|
[e345e3] | 112 | }
|
---|
| 113 |
|
---|
[7e3fc94] | 114 | const std::string &element::getName() const{
|
---|
| 115 | return name;
|
---|
[ff6a10] | 116 | }
|
---|
| 117 |
|
---|
[e345e3] | 118 | std::ostream &operator<<(std::ostream &ost,const element &elem){
|
---|
| 119 | ost << elem.getName() << "(" << elem.getNumber() << ")";
|
---|
| 120 | return ost;
|
---|
| 121 | }
|
---|
Note:
See
TracBrowser
for help on using the repository browser.