Action_Thermostats
        Add_AtomRandomPerturbation
        Add_FitFragmentPartialChargesAction
        Add_RotateAroundBondAction
        Add_SelectAtomByNameAction
        Added_ParseSaveFragmentResults
        AddingActions_SaveParseParticleParameters
        Adding_Graph_to_ChangeBondActions
        Adding_MD_integration_tests
        Adding_ParticleName_to_Atom
        Adding_StructOpt_integration_tests
        AtomFragments
        Automaking_mpqc_open
        AutomationFragmentation_failures
        Candidate_v1.5.4
        Candidate_v1.6.0
        Candidate_v1.6.1
        Candidate_v1.7.0
        ChangeBugEmailaddress
        ChangingTestPorts
        ChemicalSpaceEvaluator
        CombiningParticlePotentialParsing
        Combining_Subpackages
        Debian_Package_split
        Debian_package_split_molecuildergui_only
        Disabling_MemDebug
        Docu_Python_wait
        EmpiricalPotential_contain_HomologyGraph
        EmpiricalPotential_contain_HomologyGraph_documentation
        Enable_parallel_make_install
        Enhance_userguide
        Enhanced_StructuralOptimization
        Enhanced_StructuralOptimization_continued
        Example_ManyWaysToTranslateAtom
        Exclude_Hydrogens_annealWithBondGraph
        FitPartialCharges_GlobalError
        Fix_BoundInBox_CenterInBox_MoleculeActions
        Fix_ChargeSampling_PBC
        Fix_ChronosMutex
        Fix_FitPartialCharges
        Fix_FitPotential_needs_atomicnumbers
        Fix_ForceAnnealing
        Fix_IndependentFragmentGrids
        Fix_ParseParticles
        Fix_ParseParticles_split_forward_backward_Actions
        Fix_PopActions
        Fix_QtFragmentList_sorted_selection
        Fix_Restrictedkeyset_FragmentMolecule
        Fix_StatusMsg
        Fix_StepWorldTime_single_argument
        Fix_Verbose_Codepatterns
        Fix_fitting_potentials
        Fixes
        ForceAnnealing_goodresults
        ForceAnnealing_oldresults
        ForceAnnealing_tocheck
        ForceAnnealing_with_BondGraph
        ForceAnnealing_with_BondGraph_continued
        ForceAnnealing_with_BondGraph_continued_betteresults
        ForceAnnealing_with_BondGraph_contraction-expansion
        FragmentAction_writes_AtomFragments
        FragmentMolecule_checks_bonddegrees
        GeometryObjects
        Gui_Fixes
        Gui_displays_atomic_force_velocity
        ImplicitCharges
        IndependentFragmentGrids
        IndependentFragmentGrids_IndividualZeroInstances
        IndependentFragmentGrids_IntegrationTest
        IndependentFragmentGrids_Sole_NN_Calculation
        JobMarket_RobustOnKillsSegFaults
        JobMarket_StableWorkerPool
        JobMarket_unresolvable_hostname_fix
        MoreRobust_FragmentAutomation
        ODR_violation_mpqc_open
        PartialCharges_OrthogonalSummation
        PdbParser_setsAtomName
        PythonUI_with_named_parameters
        QtGui_reactivate_TimeChanged_changes
        Recreated_GuiChecks
        Rewrite_FitPartialCharges
        RotateToPrincipalAxisSystem_UndoRedo
        SaturateAtoms_findBestMatching
        SaturateAtoms_singleDegree
        StoppableMakroAction
        Subpackage_CodePatterns
        Subpackage_JobMarket
        Subpackage_LinearAlgebra
        Subpackage_levmar
        Subpackage_mpqc_open
        Subpackage_vmg
        Switchable_LogView
        ThirdParty_MPQC_rebuilt_buildsystem
        TrajectoryDependenant_MaxOrder
        TremoloParser_IncreasedPrecision
        TremoloParser_MultipleTimesteps
        TremoloParser_setsAtomName
        Ubuntu_1604_changes
        stable
      
      
      
| Rev | Line |  | 
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| [14de469] | 1 | /** \file element.cpp | 
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|  | 2 | * | 
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|  | 3 | * Function implementations for the class element. | 
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|  | 4 | * | 
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|  | 5 | */ | 
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|  | 6 |  | 
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| [112b09] | 7 | #include "Helpers/MemDebug.hpp" | 
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|  | 8 |  | 
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| [cd4ccc] | 9 | #include <iomanip> | 
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|  | 10 | #include <fstream> | 
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|  | 11 |  | 
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|  | 12 | #include "element.hpp" | 
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| [14de469] | 13 |  | 
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| [ead4e6] | 14 | using namespace std; | 
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|  | 15 |  | 
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| [14de469] | 16 | /************************************* Functions for class element **********************************/ | 
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|  | 17 |  | 
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|  | 18 | /** Constructor of class element. | 
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|  | 19 | */ | 
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| [d5af3e] | 20 | element::element() : | 
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|  | 21 | mass(0), | 
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|  | 22 | CovalentRadius(0), | 
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|  | 23 | VanDerWaalsRadius(0), | 
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|  | 24 | Z(-1), | 
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|  | 25 | previous(NULL), | 
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|  | 26 | next(NULL), | 
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|  | 27 | sort(NULL), | 
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|  | 28 | No(-1), | 
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|  | 29 | Valence(0), | 
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|  | 30 | NoValenceOrbitals(0) | 
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|  | 31 | { | 
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| [27c6be] | 32 | }; | 
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| [14de469] | 33 |  | 
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|  | 34 | /** Destructor of class element. | 
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|  | 35 | */ | 
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|  | 36 | element::~element() {}; | 
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|  | 37 |  | 
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|  | 38 | /** Prints element data to \a *out. | 
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|  | 39 | * \param *out outstream | 
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|  | 40 | */ | 
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| [ead4e6] | 41 | bool element::Output(ostream * const out) const | 
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| [14de469] | 42 | { | 
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| [042f82] | 43 | if (out != NULL) { | 
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|  | 44 | *out << name << "\t" << symbol << "\t" << period << "\t" << group << "\t" << block << "\t" << Z << "\t" << mass << "\t" << CovalentRadius << "\t" << VanDerWaalsRadius << endl; | 
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|  | 45 | //*out << Z << "\t"  << fixed << setprecision(11) << showpoint << mass << "g/mol\t" << name << "\t" << symbol << "\t" << endl; | 
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|  | 46 | return true; | 
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|  | 47 | } else | 
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|  | 48 | return false; | 
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| [14de469] | 49 | }; | 
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|  | 50 |  | 
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|  | 51 | /** Prints element data to \a *out. | 
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|  | 52 | * \param *out outstream | 
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| [042f82] | 53 | * \param No  cardinal number of element | 
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| [14de469] | 54 | * \param NoOfAtoms total number of atom of this element type | 
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|  | 55 | */ | 
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| [ead4e6] | 56 | bool element::Checkout(ostream * const out, const int Number, const int NoOfAtoms) const | 
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| [14de469] | 57 | { | 
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| [042f82] | 58 | if (out != NULL) { | 
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|  | 59 | *out << "Ion_Type" << Number << "\t" << NoOfAtoms << "\t" << Z << "\t1.0\t3\t3\t" << fixed << setprecision(11) << showpoint << mass << "\t" << name << "\t" << symbol <<endl; | 
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|  | 60 | return true; | 
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|  | 61 | } else | 
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|  | 62 | return false; | 
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| [14de469] | 63 | }; | 
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| [ead4e6] | 64 |  | 
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|  | 65 | atomicNumber_t element::getNumber() const{ | 
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|  | 66 | return Z; | 
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|  | 67 | } | 
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|  | 68 |  | 
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|  | 69 | string element::getSymbol() const{ | 
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|  | 70 | return string(symbol); | 
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|  | 71 | } | 
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