source: src/defs.hpp@ 09af1b

Action_Thermostats Add_AtomRandomPerturbation Add_FitFragmentPartialChargesAction Add_RotateAroundBondAction Add_SelectAtomByNameAction Added_ParseSaveFragmentResults AddingActions_SaveParseParticleParameters Adding_Graph_to_ChangeBondActions Adding_MD_integration_tests Adding_ParticleName_to_Atom Adding_StructOpt_integration_tests AtomFragments Automaking_mpqc_open AutomationFragmentation_failures Candidate_v1.5.4 Candidate_v1.6.0 Candidate_v1.6.1 ChangeBugEmailaddress ChangingTestPorts ChemicalSpaceEvaluator CombiningParticlePotentialParsing Combining_Subpackages Debian_Package_split Debian_package_split_molecuildergui_only Disabling_MemDebug Docu_Python_wait EmpiricalPotential_contain_HomologyGraph EmpiricalPotential_contain_HomologyGraph_documentation Enable_parallel_make_install Enhance_userguide Enhanced_StructuralOptimization Enhanced_StructuralOptimization_continued Example_ManyWaysToTranslateAtom Exclude_Hydrogens_annealWithBondGraph FitPartialCharges_GlobalError Fix_BoundInBox_CenterInBox_MoleculeActions Fix_ChargeSampling_PBC Fix_ChronosMutex Fix_FitPartialCharges Fix_FitPotential_needs_atomicnumbers Fix_ForceAnnealing Fix_IndependentFragmentGrids Fix_ParseParticles Fix_ParseParticles_split_forward_backward_Actions Fix_PopActions Fix_QtFragmentList_sorted_selection Fix_Restrictedkeyset_FragmentMolecule Fix_StatusMsg Fix_StepWorldTime_single_argument Fix_Verbose_Codepatterns Fix_fitting_potentials Fixes ForceAnnealing_goodresults ForceAnnealing_oldresults ForceAnnealing_tocheck ForceAnnealing_with_BondGraph ForceAnnealing_with_BondGraph_continued ForceAnnealing_with_BondGraph_continued_betteresults ForceAnnealing_with_BondGraph_contraction-expansion FragmentAction_writes_AtomFragments FragmentMolecule_checks_bonddegrees GeometryObjects Gui_Fixes Gui_displays_atomic_force_velocity ImplicitCharges IndependentFragmentGrids IndependentFragmentGrids_IndividualZeroInstances IndependentFragmentGrids_IntegrationTest IndependentFragmentGrids_Sole_NN_Calculation JobMarket_RobustOnKillsSegFaults JobMarket_StableWorkerPool JobMarket_unresolvable_hostname_fix MoreRobust_FragmentAutomation ODR_violation_mpqc_open PartialCharges_OrthogonalSummation PdbParser_setsAtomName PythonUI_with_named_parameters QtGui_reactivate_TimeChanged_changes Recreated_GuiChecks Rewrite_FitPartialCharges RotateToPrincipalAxisSystem_UndoRedo SaturateAtoms_findBestMatching SaturateAtoms_singleDegree StoppableMakroAction Subpackage_CodePatterns Subpackage_JobMarket Subpackage_LinearAlgebra Subpackage_levmar Subpackage_mpqc_open Subpackage_vmg Switchable_LogView ThirdParty_MPQC_rebuilt_buildsystem TrajectoryDependenant_MaxOrder TremoloParser_IncreasedPrecision TremoloParser_MultipleTimesteps TremoloParser_setsAtomName Ubuntu_1604_changes stable
Last change on this file since 09af1b was 6ac7ee, checked in by Frederik Heber <heber@…>, 16 years ago

Merge branch 'ConcaveHull' of ../espack2 into ConcaveHull

Conflicts:

molecuilder/src/boundary.cpp
molecuilder/src/boundary.hpp
molecuilder/src/builder.cpp
molecuilder/src/linkedcell.cpp
molecuilder/src/linkedcell.hpp
molecuilder/src/vector.cpp
molecuilder/src/vector.hpp
util/src/NanoCreator.c

Basically, this resulted from a lot of conversions two from spaces to one tab, which is my standard indentation. The mess was caused by eclipse auto-indenting. And in espack2:ConcaveHull was the new stuff, so all from ConcaveHull was replaced in case of doubt.
Additionally, vector had ofstream << operator instead ostream << ...

  • Property mode set to 100755
File size: 4.0 KB
Line 
1/** \file defs.hpp
2 *
3 * Constant definitons and enumerations.
4 *
5 */
6
7#ifndef DEFS_HPP_
8#define DEFS_HPP_
9
10using namespace std;
11
12#define MYEPSILON 1e-13 //!< machine epsilon precision
13#define NDIM 3 //!< number of spatial dimensions
14#define MAX_ELEMENTS 128 //!< maximum number of elements for certain lookup tables
15#define AtomicLengthToAngstroem 0.52917721 //!< conversion factor from atomic length/bohrradius to angstroem
16#define BONDTHRESHOLD 0.5 //!< CSD threshold in bond check which is the width of the interval whose center is the sum of the covalent radii
17#define AtomicEnergyToKelvin 315774.67 //!< conversion factor from atomic energy to kelvin via boltzmann factor
18#define VERSIONSTRING "v1.0"
19
20#define LocalPath "./"
21
22//enum BondOrderScheme { NoScheme, BottomUp, TopDown, ANOVA, Combined }; //!< Fragmentation scheme used in BOSS
23
24enum EdgeType { Undetermined, TreeEdge, BackEdge }; //!< edge type in a graph after Depth-First-Search analysis.
25
26enum Shading { white, lightgray, darkgray, black }; //!< color in Breadth-First-Search analysis
27
28//enum CutCyclicBond { KeepBond, SaturateBond }; //!< Saturation scheme either atom- or bondwise
29
30// Specifting whether a value in the parameter file must be specified or is optional
31enum necessity { optional, //!< parameter is optional, if not given sensible value is chosen
32 critical //!< parameter must be given or programme won't initiate
33 };
34
35// Specifying the status of the on command line given config file
36enum ConfigStatus { absent, empty, present };
37
38// Specifying the cast type to be read of a parameter, see ParseForParameter()
39enum value_type { string_type, double_type, int_type, row_int, row_double, grid, lower_trigrid, upper_trigrid};
40
41// maximum length of any char array
42#define MAXSTRINGSIZE 255
43
44// various standard filenames
45#define DEFAULTCONFIG "main_pcp_linux" //!< default filename of config file
46#define CONVEXENVELOPE "ConvexEnvelope.dat" //!< default filename of convex envelope tecplot data file
47#define KEYSETFILE "KeySets.dat" //!< default filename of BOSSANOVA key sets file
48#define ADJACENCYFILE "Adjacency.dat" //!< default filename of BOSSANOVA adjacancy file
49#define TEFACTORSFILE "TE-Factors.dat" //!< default filename of BOSSANOVA total energy factors file
50#define FORCESFILE "Forces-Factors.dat" //!< default filename of BOSSANOVA force factors file
51#define HCORRECTIONSUFFIX "Hcorrection.dat" //!< default filename of BOSSANOVA H correction file (unwanted saturation interaction)
52#define FITCONSTANTSUFFIX "FitConstant.dat" //!< suffix of default filename of BOSSANOVA fit constants file (unwanted saturation interaction)
53#define SHIELDINGSUFFIX "sigma_all.csv" //!< default filename of BOSSANOVA shieldings file
54#define SHIELDINGPASSUFFIX "sigma_all_PAS.csv" //!< default filename of BOSSANOVA shieldings PAS file
55#define ORDERATSITEFILE "OrderAtSite.dat" //!< default filename of BOSSANOVA Bond Order at each atom file
56#define ENERGYPERFRAGMENT "EnergyPerFragment" //!< default filename of BOSSANOVA Energy contribution Per Fragment file
57#define FRAGMENTPREFIX "BondFragment" //!< default filename prefix of BOSSANOVA fragment config and directories
58#define STANDARDCONFIG "unknown.conf" //!< default filename of standard config file
59#define STANDARDELEMENTSDB "elements.db" //!< default filename of elements data base with masses, Z, VanDerWaals radii, ...
60#define STANDARDVALENCEDB "valence.db" //!< default filename of valence number per element database
61#define STANDARDORBITALDB "orbitals.db" //!< default filename of orbitals per element database
62#define STANDARDHBONDDISTANCEDB "Hbonddistance.db" //!< default filename of typial bond distance to hydrogen database
63#define STANDARDHBONDANGLEDB "Hbondangle.db" //!< default filename of typial bond angle to hydrogen database
64
65// some values
66#define SOLVENTDENSITY_A 0.6022142
67#define SOLVENTDENSITY_a0 0.089238936
68
69
70#define UPDATECOUNT 10 //!< update ten sites per BOSSANOVA interval
71
72#endif /*DEFS_HPP_*/
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