[8eb17a] | 1 | #ifndef BOUNDARY_HPP_
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| 2 | #define BOUNDARY_HPP_
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| 3 |
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| 4 | class BoundaryPointSet;
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| 5 | class BoundaryLineSet;
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| 6 | class BoundaryTriangleSet;
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| 7 |
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| 8 | // include config.h
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| 9 | #ifdef HAVE_CONFIG_H
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| 10 | #include <config.h>
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| 11 | #endif
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| 12 |
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| 13 | // STL headers
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| 14 | #include <map>
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| 15 | #include <set>
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| 16 | #include <deque>
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| 17 |
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| 18 | #include <gsl/gsl_poly.h>
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| 19 |
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| 20 | #include "molecules.hpp"
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| 21 |
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| 22 | template <typename T> void SetEndpointsOrdered(T endpoints[2], T endpoint1, T endpoint2)
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| 23 | {
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| 24 | if (endpoint1->Nr < endpoint2->Nr) {
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| 25 | endpoints[0] = endpoint1;
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| 26 | endpoints[1] = endpoint2;
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| 27 | } else {
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| 28 | endpoints[0] = endpoint2;
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| 29 | endpoints[1] = endpoint1;
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| 30 | }
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| 31 | };
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| 32 |
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| 33 | class BoundaryPointSet {
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| 34 | public:
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| 35 | BoundaryPointSet();
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| 36 | BoundaryPointSet(atom *Walker);
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| 37 | ~BoundaryPointSet();
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| 38 |
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| 39 | void AddLine(class BoundaryLineSet *line);
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| 40 |
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| 41 | LineMap lines;
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| 42 | int LinesCount;
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| 43 | atom *node;
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| 44 | int Nr;
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| 45 | };
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| 46 |
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| 47 | class BoundaryLineSet {
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| 48 | public:
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| 49 | BoundaryLineSet();
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| 50 | BoundaryLineSet(class BoundaryPointSet *Point[2], int number);
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| 51 | ~BoundaryLineSet();
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| 52 |
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| 53 | void AddTriangle(class BoundaryTriangleSet *triangle);
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| 54 |
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| 55 | class BoundaryPointSet *endpoints[2];
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| 56 | TriangleMap triangles;
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| 57 | int TrianglesCount;
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| 58 | int Nr;
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| 59 | };
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| 60 |
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| 61 | class BoundaryTriangleSet {
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| 62 | public:
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| 63 | BoundaryTriangleSet();
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| 64 | BoundaryTriangleSet(class BoundaryLineSet *line[3], int number);
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| 65 | ~BoundaryTriangleSet();
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| 66 |
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[e9b8bb] | 67 | void GetNormalVector(Vector &NormalVector);
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[8eb17a] | 68 |
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| 69 | class BoundaryPointSet *endpoints[3];
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| 70 | class BoundaryLineSet *lines[3];
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| 71 | int Nr;
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| 72 | };
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| 73 |
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| 74 | class Tesselation {
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| 75 | public:
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| 76 |
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| 77 | Tesselation();
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| 78 | ~Tesselation();
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| 79 |
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| 80 | void TesselateOnBoundary(ofstream *out, config *configuration, molecule *mol);
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| 81 | void GuessStartingTriangle(ofstream *out);
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| 82 | void AddPoint(atom * Walker);
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| 83 |
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| 84 | PointMap PointsOnBoundary;
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| 85 | LineMap LinesOnBoundary;
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| 86 | TriangleMap TrianglesOnBoundary;
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| 87 | class BoundaryPointSet *BPS[2];
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| 88 | class BoundaryLineSet *BLS[3];
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| 89 | class BoundaryTriangleSet *BTS;
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| 90 | int PointsOnBoundaryCount;
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| 91 | int LinesOnBoundaryCount;
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| 92 | int TrianglesOnBoundaryCount;
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| 93 | };
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| 94 |
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| 95 |
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| 96 | ostream & operator << (ostream &ost, BoundaryPointSet &a);
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| 97 | ostream & operator << (ostream &ost, BoundaryLineSet &a);
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| 98 | ostream & operator << (ostream &ost, BoundaryTriangleSet &a);
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| 99 |
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| 100 |
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[6c5812] | 101 | double VolumeOfConvexEnvelope(ofstream *out, config *configuration, Boundaries *BoundaryPoints, molecule *mol);
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[318bfd] | 102 | double * GetDiametersOfCluster(ofstream *out, Boundaries *BoundaryPtr, molecule *mol, bool IsAngstroem);
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[edb650] | 103 | void PrepareClustersinWater(ofstream *out, config *configuration, molecule *mol, double ClusterVolume, double celldensity);
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[8eb17a] | 104 |
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| 105 |
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| 106 | #endif /*BOUNDARY_HPP_*/
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