1 | /*
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2 | * Project: MoleCuilder
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3 | * Description: creates and alters molecular systems
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4 | * Copyright (C) 2010 University of Bonn. All rights reserved.
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5 | * Please see the LICENSE file or "Copyright notice" in builder.cpp for details.
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6 | */
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7 |
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8 | /*
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9 | * atom_bondedparticleinfo.cpp
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10 | *
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11 | * Created on: Oct 19, 2009
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12 | * Author: heber
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13 | */
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14 |
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15 | // include config.h
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16 | #ifdef HAVE_CONFIG_H
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17 | #include <config.h>
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18 | #endif
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19 |
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20 | #include "CodePatterns/MemDebug.hpp"
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21 |
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22 | #include "CodePatterns/Assert.hpp"
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23 | #include "CodePatterns/Log.hpp"
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24 |
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25 | #include "WorldTime.hpp"
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26 |
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27 | #include "atom_bondedparticleinfo.hpp"
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28 |
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29 | /** Constructor of class BondedParticleInfo.
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30 | */
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31 | BondedParticleInfo::BondedParticleInfo() :
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32 | AdaptiveOrder(0),
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33 | MaxOrder(false)
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34 | {}
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35 |
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36 | /** Destructor of class BondedParticleInfo.
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37 | */
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38 | BondedParticleInfo::~BondedParticleInfo()
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39 | {}
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40 |
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41 | void BondedParticleInfo::AppendTrajectoryStep()
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42 | {
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43 | ListOfBonds.push_back(BondList());
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44 | LOG(5,"BondedParticleInfo::AppendTrajectoryStep() called, size is " << ListOfBonds.size());
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45 | }
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46 |
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47 | const BondList& BondedParticleInfo::getListOfBonds() const
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48 | {
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49 | ASSERT(WorldTime::getTime() < ListOfBonds.size(),
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50 | "BondedParticleInfo::getBondsAtStep() - Access out of range: "
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51 | +toString(WorldTime::getTime())
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52 | +" not in [0,"+toString(ListOfBonds.size())+").");
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53 | return ListOfBonds[WorldTime::getTime()];
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54 | }
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55 |
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56 | BondList& BondedParticleInfo::getListOfBonds()
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57 | {
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58 | const unsigned int size = ListOfBonds.size();
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59 | ASSERT(WorldTime::getTime() <= size,
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60 | "BondedParticleInfo::getBondsAtStep() - Access out of range: "
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61 | +toString(WorldTime::getTime())
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62 | +" not in [0,"+toString(size)+"].");
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63 | if (WorldTime::getTime() == size) {
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64 | UpdateSteps();
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65 | }
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66 | return ListOfBonds[WorldTime::getTime()];
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67 | }
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68 |
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69 | const BondList& BondedParticleInfo::getListOfBondsAtStep(unsigned int _step) const
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70 | {
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71 | ASSERT(_step < ListOfBonds.size(),
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72 | "BondedParticleInfo::getBondsAtStep() - Access out of range: "
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73 | +toString(_step)
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74 | +" not in [0,"+toString(ListOfBonds.size())+").");
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75 | return ListOfBonds[_step];
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76 | }
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77 |
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78 | BondList& BondedParticleInfo::getListOfBondsAtStep(unsigned int _step)
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79 | {
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80 | const unsigned int size = ListOfBonds.size();
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81 | ASSERT(_step <= size,
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82 | "BondedParticleInfo::getBondsAtStep() - Access out of range: "
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83 | +toString(_step)
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84 | +" not in [0,"+toString(size)+"].");
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85 | if (_step == size) {
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86 | UpdateSteps();
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87 | }
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88 | return ListOfBonds[_step];
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89 | }
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