| 1 | /* | 
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| 2 | * Project: MoleCuilder | 
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| 3 | * Description: creates and alters molecular systems | 
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| 4 | * Copyright (C)  2010 University of Bonn. All rights reserved. | 
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| 5 | * Please see the LICENSE file or "Copyright notice" in builder.cpp for details. | 
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| 6 | */ | 
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| 7 |  | 
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| 8 | /* | 
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| 9 | * atom_bondedparticleinfo.cpp | 
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| 10 | * | 
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| 11 | *  Created on: Oct 19, 2009 | 
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| 12 | *      Author: heber | 
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| 13 | */ | 
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| 14 |  | 
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| 15 | // include config.h | 
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| 16 | #ifdef HAVE_CONFIG_H | 
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| 17 | #include <config.h> | 
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| 18 | #endif | 
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| 19 |  | 
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| 20 | #include "CodePatterns/MemDebug.hpp" | 
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| 21 |  | 
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| 22 | #include "CodePatterns/Assert.hpp" | 
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| 23 | #include "CodePatterns/Log.hpp" | 
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| 24 |  | 
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| 25 | #include "WorldTime.hpp" | 
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| 26 |  | 
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| 27 | #include "atom_bondedparticleinfo.hpp" | 
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| 28 |  | 
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| 29 | /** Constructor of class BondedParticleInfo. | 
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| 30 | */ | 
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| 31 | BondedParticleInfo::BondedParticleInfo() : | 
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| 32 | AdaptiveOrder(0), | 
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| 33 | MaxOrder(false) | 
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| 34 | {} | 
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| 35 |  | 
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| 36 | /** Destructor of class BondedParticleInfo. | 
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| 37 | */ | 
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| 38 | BondedParticleInfo::~BondedParticleInfo() | 
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| 39 | {} | 
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| 40 |  | 
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| 41 | void BondedParticleInfo::AppendTrajectoryStep() | 
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| 42 | { | 
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| 43 | ListOfBonds.push_back(BondList()); | 
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| 44 | LOG(5,"BondedParticleInfo::AppendTrajectoryStep() called, size is " << ListOfBonds.size()); | 
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| 45 | } | 
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| 46 |  | 
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| 47 | const BondList& BondedParticleInfo::getListOfBonds() const | 
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| 48 | { | 
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| 49 | ASSERT(WorldTime::getTime() < ListOfBonds.size(), | 
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| 50 | "BondedParticleInfo::getBondsAtStep() - Access out of range: " | 
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| 51 | +toString(WorldTime::getTime()) | 
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| 52 | +" not in [0,"+toString(ListOfBonds.size())+")."); | 
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| 53 | return ListOfBonds[WorldTime::getTime()]; | 
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| 54 | } | 
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| 55 |  | 
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| 56 | BondList& BondedParticleInfo::getListOfBonds() | 
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| 57 | { | 
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| 58 | const unsigned int size = ListOfBonds.size(); | 
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| 59 | ASSERT(WorldTime::getTime() <= size, | 
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| 60 | "BondedParticleInfo::getBondsAtStep() - Access out of range: " | 
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| 61 | +toString(WorldTime::getTime()) | 
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| 62 | +" not in [0,"+toString(size)+"]."); | 
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| 63 | if (WorldTime::getTime() == size) { | 
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| 64 | UpdateSteps(); | 
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| 65 | } | 
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| 66 | return ListOfBonds[WorldTime::getTime()]; | 
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| 67 | } | 
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| 68 |  | 
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| 69 | const BondList& BondedParticleInfo::getListOfBondsAtStep(unsigned int _step) const | 
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| 70 | { | 
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| 71 | ASSERT(_step < ListOfBonds.size(), | 
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| 72 | "BondedParticleInfo::getBondsAtStep() - Access out of range: " | 
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| 73 | +toString(_step) | 
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| 74 | +" not in [0,"+toString(ListOfBonds.size())+")."); | 
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| 75 | return ListOfBonds[_step]; | 
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| 76 | } | 
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| 77 |  | 
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| 78 | BondList& BondedParticleInfo::getListOfBondsAtStep(unsigned int _step) | 
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| 79 | { | 
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| 80 | const unsigned int size = ListOfBonds.size(); | 
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| 81 | ASSERT(_step <= size, | 
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| 82 | "BondedParticleInfo::getBondsAtStep() - Access out of range: " | 
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| 83 | +toString(_step) | 
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| 84 | +" not in [0,"+toString(size)+"]."); | 
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| 85 | if (_step == size) { | 
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| 86 | UpdateSteps(); | 
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| 87 | } | 
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| 88 | return ListOfBonds[_step]; | 
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| 89 | } | 
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