source: src/atom_atominfo.cpp@ bf3817

Action_Thermostats Add_AtomRandomPerturbation Add_FitFragmentPartialChargesAction Add_RotateAroundBondAction Add_SelectAtomByNameAction Added_ParseSaveFragmentResults AddingActions_SaveParseParticleParameters Adding_Graph_to_ChangeBondActions Adding_MD_integration_tests Adding_ParticleName_to_Atom Adding_StructOpt_integration_tests AtomFragments Automaking_mpqc_open AutomationFragmentation_failures Candidate_v1.5.4 Candidate_v1.6.0 Candidate_v1.6.1 ChangeBugEmailaddress ChangingTestPorts ChemicalSpaceEvaluator CombiningParticlePotentialParsing Combining_Subpackages Debian_Package_split Debian_package_split_molecuildergui_only Disabling_MemDebug Docu_Python_wait EmpiricalPotential_contain_HomologyGraph EmpiricalPotential_contain_HomologyGraph_documentation Enable_parallel_make_install Enhance_userguide Enhanced_StructuralOptimization Enhanced_StructuralOptimization_continued Example_ManyWaysToTranslateAtom Exclude_Hydrogens_annealWithBondGraph FitPartialCharges_GlobalError Fix_BoundInBox_CenterInBox_MoleculeActions Fix_ChargeSampling_PBC Fix_ChronosMutex Fix_FitPartialCharges Fix_FitPotential_needs_atomicnumbers Fix_ForceAnnealing Fix_IndependentFragmentGrids Fix_ParseParticles Fix_ParseParticles_split_forward_backward_Actions Fix_PopActions Fix_QtFragmentList_sorted_selection Fix_Restrictedkeyset_FragmentMolecule Fix_StatusMsg Fix_StepWorldTime_single_argument Fix_Verbose_Codepatterns Fix_fitting_potentials Fixes ForceAnnealing_goodresults ForceAnnealing_oldresults ForceAnnealing_tocheck ForceAnnealing_with_BondGraph ForceAnnealing_with_BondGraph_continued ForceAnnealing_with_BondGraph_continued_betteresults ForceAnnealing_with_BondGraph_contraction-expansion FragmentAction_writes_AtomFragments FragmentMolecule_checks_bonddegrees GeometryObjects Gui_Fixes Gui_displays_atomic_force_velocity ImplicitCharges IndependentFragmentGrids IndependentFragmentGrids_IndividualZeroInstances IndependentFragmentGrids_IntegrationTest IndependentFragmentGrids_Sole_NN_Calculation JobMarket_RobustOnKillsSegFaults JobMarket_StableWorkerPool JobMarket_unresolvable_hostname_fix MoreRobust_FragmentAutomation ODR_violation_mpqc_open PartialCharges_OrthogonalSummation PdbParser_setsAtomName PythonUI_with_named_parameters QtGui_reactivate_TimeChanged_changes Recreated_GuiChecks Rewrite_FitPartialCharges RotateToPrincipalAxisSystem_UndoRedo SaturateAtoms_findBestMatching SaturateAtoms_singleDegree StoppableMakroAction Subpackage_CodePatterns Subpackage_JobMarket Subpackage_LinearAlgebra Subpackage_levmar Subpackage_mpqc_open Subpackage_vmg Switchable_LogView ThirdParty_MPQC_rebuilt_buildsystem TrajectoryDependenant_MaxOrder TremoloParser_IncreasedPrecision TremoloParser_MultipleTimesteps TremoloParser_setsAtomName Ubuntu_1604_changes stable
Last change on this file since bf3817 was bf3817, checked in by Frederik Heber <heber@…>, 15 years ago

Added ifdef HAVE_CONFIG and config.h include to each and every cpp file.

  • is now topmost in front of MemDebug.hpp (and any other).
  • Property mode set to 100644
File size: 3.5 KB
Line 
1/*
2 * atom_atominfo.cpp
3 *
4 * Created on: Oct 19, 2009
5 * Author: heber
6 */
7
8// include config.h
9#ifdef HAVE_CONFIG_H
10#include <config.h>
11#endif
12
13#include "Helpers/MemDebug.hpp"
14
15#include "periodentafel.hpp"
16#include "World.hpp"
17#include "element.hpp"
18#include "atom_atominfo.hpp"
19
20/** Constructor of class AtomInfo.
21 */
22AtomInfo::AtomInfo() :
23 AtomicElement(NULL)
24{};
25
26/** Copy constructor of class AtomInfo.
27 */
28AtomInfo::AtomInfo(const AtomInfo &_atom) :
29 AtomicPosition(_atom.AtomicPosition),
30 AtomicElement(_atom.AtomicElement)
31{};
32
33AtomInfo::AtomInfo(const VectorInterface &_v) :
34 AtomicPosition(_v.getPosition()),
35 AtomicElement(NULL)
36{};
37
38/** Destructor of class AtomInfo.
39 */
40AtomInfo::~AtomInfo()
41{
42};
43
44const element *AtomInfo::getType() const
45{
46 return AtomicElement;
47}
48
49const double& AtomInfo::operator[](size_t i) const
50{
51 return AtomicPosition[i];
52}
53
54const double& AtomInfo::at(size_t i) const
55{
56 return AtomicPosition.at(i);
57}
58
59void AtomInfo::set(size_t i, const double value)
60{
61 AtomicPosition.at(i) = value;
62}
63
64const Vector& AtomInfo::getPosition() const
65{
66 return AtomicPosition;
67}
68
69void AtomInfo::setType(const element* _type) {
70 AtomicElement = _type;
71}
72
73void AtomInfo::setType(const int Z) {
74 const element *elem = World::getInstance().getPeriode()->FindElement(Z);
75 setType(elem);
76}
77
78void AtomInfo::setPosition(const Vector& _vector)
79{
80 AtomicPosition = _vector;
81 //cout << "AtomInfo::setPosition: " << getType()->symbol << " at " << getPosition() << endl;
82}
83
84const VectorInterface& AtomInfo::operator+=(const Vector& b)
85{
86 AtomicPosition += b;
87 return *this;
88}
89
90const VectorInterface& AtomInfo::operator-=(const Vector& b)
91{
92 AtomicPosition -= b;
93 return *this;
94}
95
96Vector const AtomInfo::operator+(const Vector& b) const
97{
98 Vector a(AtomicPosition);
99 a += b;
100 return a;
101}
102
103Vector const AtomInfo::operator-(const Vector& b) const
104{
105 Vector a(AtomicPosition);
106 a -= b;
107 return a;
108}
109
110double AtomInfo::distance(const Vector &point) const
111{
112 return AtomicPosition.distance(point);
113}
114
115double AtomInfo::DistanceSquared(const Vector &y) const
116{
117 return AtomicPosition.DistanceSquared(y);
118}
119
120double AtomInfo::distance(const VectorInterface &_atom) const
121{
122 return _atom.distance(AtomicPosition);
123}
124
125double AtomInfo::DistanceSquared(const VectorInterface &_atom) const
126{
127 return _atom.DistanceSquared(AtomicPosition);
128}
129
130VectorInterface &AtomInfo::operator=(const Vector& _vector)
131{
132 AtomicPosition = _vector;
133 return *this;
134}
135
136void AtomInfo::ScaleAll(const double *factor)
137{
138 AtomicPosition.ScaleAll(factor);
139}
140
141void AtomInfo::ScaleAll(const Vector &factor)
142{
143 AtomicPosition.ScaleAll(factor);
144}
145
146void AtomInfo::Scale(const double factor)
147{
148 AtomicPosition.Scale(factor);
149}
150
151void AtomInfo::Zero()
152{
153 AtomicPosition.Zero();
154}
155
156void AtomInfo::One(const double one)
157{
158 AtomicPosition.One(one);
159}
160
161void AtomInfo::LinearCombinationOfVectors(const Vector &x1, const Vector &x2, const Vector &x3, const double * const factors)
162{
163 AtomicPosition.LinearCombinationOfVectors(x1,x2,x3,factors);
164}
165
166const AtomInfo& operator*=(AtomInfo& a, const double m)
167{
168 a.Scale(m);
169 return a;
170}
171
172AtomInfo const operator*(const AtomInfo& a, const double m)
173{
174 AtomInfo copy(a);
175 copy *= m;
176 return copy;
177}
178
179AtomInfo const operator*(const double m, const AtomInfo& a)
180{
181 AtomInfo copy(a);
182 copy *= m;
183 return copy;
184}
185
186std::ostream & AtomInfo::operator << (std::ostream &ost) const
187{
188 return (ost << getPosition());
189}
190
191std::ostream & operator << (std::ostream &ost, const AtomInfo &a)
192{
193 ost << a;
194 return ost;
195}
196
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