| [1e1098] | 1 | /*
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 | 2 |  * Project: MoleCuilder
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 | 3 |  * Description: creates and alters molecular systems
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 | 4 |  * Copyright (C)  2013 Frederik Heber. All rights reserved.
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 | 5 |  * 
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 | 6 |  *
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 | 7 |  *   This file is part of MoleCuilder.
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 | 8 |  *
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 | 9 |  *    MoleCuilder is free software: you can redistribute it and/or modify
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 | 10 |  *    it under the terms of the GNU General Public License as published by
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 | 11 |  *    the Free Software Foundation, either version 2 of the License, or
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 | 12 |  *    (at your option) any later version.
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 | 13 |  *
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 | 14 |  *    MoleCuilder is distributed in the hope that it will be useful,
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 | 15 |  *    but WITHOUT ANY WARRANTY; without even the implied warranty of
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 | 16 |  *    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
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 | 17 |  *    GNU General Public License for more details.
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 | 18 |  *
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 | 19 |  *    You should have received a copy of the GNU General Public License
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 | 20 |  *    along with MoleCuilder.  If not, see <http://www.gnu.org/licenses/>.
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 | 21 |  */
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 | 22 | 
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 | 23 | /*
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 | 24 |  * QtHomologyList.cpp
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 | 25 |  *
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| [d20ded] | 26 |  *  Created on: Jun 24, 2013
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| [1e1098] | 27 |  *      Author: heber
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 | 28 |  */
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 | 29 | 
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 | 30 | // include config.h
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 | 31 | #ifdef HAVE_CONFIG_H
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 | 32 | #include <config.h>
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 | 33 | #endif
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 | 34 | 
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 | 35 | #include "Views/Qt4/QtHomologyList.hpp"
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| [4aed01] | 36 | #include "Views/Qt4/QtNumericalItem.hpp"
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| [1e1098] | 37 | 
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| [454b555] | 38 | #include <QtGui/QAbstractItemView>
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| [a8f5d94] | 39 | #include <QtGui/QTreeWidget>
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| [b677ab] | 40 | #include <QtGui/QTabWidget>
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| [3b1798] | 41 | #include <Qt/qsettings.h>
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| [0ac3e3] | 42 | #include <Qt/qsplitter.h>
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 | 43 | #include <Qt/qboxlayout.h>
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| [1e1098] | 44 | 
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| [9eb71b3] | 45 | //#include "CodePatterns/MemDebug.hpp"
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| [1e1098] | 46 | 
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| [4aed01] | 47 | #include <iterator>
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 | 48 | #include <iostream>
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 | 49 | 
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 | 50 | #include <boost/assign.hpp>
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 | 51 | 
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| [b677ab] | 52 | #include "CodePatterns/Log.hpp"
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 | 53 | 
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| [1e1098] | 54 | #include "Fragmentation/Homology/HomologyContainer.hpp"
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| [b677ab] | 55 | #include "FunctionApproximation/FunctionModel.hpp"
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 | 56 | #include "FunctionApproximation/TrainingData.hpp"
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 | 57 | #include "Potentials/CompoundPotential.hpp"
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 | 58 | #include "Potentials/EmpiricalPotential.hpp"
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 | 59 | #include "Potentials/InternalCoordinates/Coordinator.hpp"
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| [f0964c] | 60 | #include "Potentials/PotentialRegistry.hpp"
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| [b677ab] | 61 | #ifdef HAVE_QWT
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 | 62 | #include "UIElements/Views/Qt4/Plotting/QSeisData.hpp"
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 | 63 | #include "UIElements/Views/Qt4/Plotting/QSeisPageRegistry.hpp"
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 | 64 | #include "UIElements/Views/Qt4/Plotting/QSeisPlotCurve.hpp"
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 | 65 | #include "UIElements/Views/Qt4/Plotting/QSeisPlotPage.hpp"
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 | 66 | #include "UIElements/Views/Qt4/Plotting/QSeisCurveRegistry.hpp"
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 | 67 | #endif
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| [1e1098] | 68 | #include "World.hpp"
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 | 69 | 
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 | 70 | using namespace std;
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 | 71 | 
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| [4aed01] | 72 | using namespace boost::assign;
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 | 73 | 
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| [1e1098] | 74 | const int QtHomologyList::COLUMNCOUNT = COLUMNTYPES_MAX;
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 | 75 | const char *QtHomologyList::COLUMNNAMES[QtHomologyList::COLUMNCOUNT]={"Number","Nodes","Edges","Occurrence"};
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 | 76 | 
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 | 77 | QtHomologyList::QtHomologyList(QWidget * _parent) :
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| [a8f5d94] | 78 |     QWidget(_parent),
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| [f0964c] | 79 |     Observer("QtHomologyList"),
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| [3c9ac3] | 80 |     homologycontainer_enabled(false),
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| [f0964c] | 81 |     potentialregistry_enabled(false)
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| [1e1098] | 82 | {
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| [3b1798] | 83 |   QHBoxLayout* layout = new QHBoxLayout(this);
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| [a8f5d94] | 84 |   QSplitter *splitter = new QSplitter (Qt::Horizontal, this );
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| [0ac3e3] | 85 |   layout->addWidget(splitter);
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 | 86 | 
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 | 87 |   // tree widget
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| [a8f5d94] | 88 |   treewidget = new QTreeWidget (splitter);
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| [0ac3e3] | 89 |   treewidget->setSelectionMode( QTreeWidget::SingleSelection );
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 | 90 |   treewidget->setColumnCount(COLUMNCOUNT);
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| [562b0a] | 91 |   treewidget->setSortingEnabled(true);
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| [3b1798] | 92 |   //treewidget->setSizePolicy( QSizePolicy::Minimum, sizePolicy().verticalPolicy() );
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| [0ac3e3] | 93 |   QStringList header;
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 | 94 |   for(int i=0; i<COLUMNCOUNT;++i)
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 | 95 |     header << COLUMNNAMES[i];
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 | 96 |   treewidget->setHeaderLabels(header);
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| [562b0a] | 97 |   treewidget->sortByColumn(0);
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| [a8f5d94] | 98 |   splitter->addWidget(treewidget);
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| [b677ab] | 99 | 
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| [0ac3e3] | 100 |   // plot widget
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| [b677ab] | 101 | #ifdef HAVE_QWT
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 | 102 |   widget = new QSeisPlotPage ("energy", splitter);
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| [3b1798] | 103 |   //widget->setSizePolicy( QSizePolicy::MinimumExpanding, sizePolicy().verticalPolicy() );
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| [b677ab] | 104 |   QSeisPageRegistry::getInstance().registerInstance(widget);
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 | 105 | #else
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 | 106 |   widget = new QWidget(splitter);
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 | 107 | #endif
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| [a8f5d94] | 108 |   splitter->addWidget(widget);
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| [1e1098] | 109 | 
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| [3b1798] | 110 |   dirty = true;
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 | 111 |   
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 | 112 |   QSettings settings;
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 | 113 |   settings.beginGroup("QtHomologyList");
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 | 114 |   treewidget->resize(settings.value("treewidget_size", QSize(width()/2, 20)).toSize());
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 | 115 |   widget->resize(settings.value("plotwidget_size", QSize(width()/2, 20)).toSize());
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 | 116 |   settings.endGroup();
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| [52bb5a] | 117 | 
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| [1e1098] | 118 | 
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 | 119 |         HomologyContainer &homologies = World::getInstance().getHomologies();
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 | 120 |         homologies.signOn(this);
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| [3c9ac3] | 121 |         homologycontainer_enabled = true;
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| [f0964c] | 122 |         PotentialRegistry::getInstance().signOn(this);
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 | 123 |         potentialregistry_enabled = true;
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| [1e1098] | 124 | 
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| [b677ab] | 125 | #ifdef HAVE_QWT
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 | 126 |   //connect the PlotCurveRegistry directly to the PlotPage registry
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 | 127 |   connect(QSeisCurveRegistry::getPointer(), SIGNAL(curveAdded(std::string, QString)), QSeisPageRegistry::getPointer(), SLOT(addCurve(std::string, QString)));
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 | 128 |   connect(QSeisCurveRegistry::getPointer(), SIGNAL(curveRemoved(std::string, QString)), QSeisPageRegistry::getPointer(), SLOT(removeCurve(std::string, QString)));
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 | 129 |   connect(QSeisCurveRegistry::getPointer(), SIGNAL(curveChanged(std::string, QString)), QSeisPageRegistry::getPointer(), SLOT(updateCurve(std::string, QString)));
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 | 130 | #endif
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 | 131 | 
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| [a8f5d94] | 132 |   connect(treewidget,SIGNAL(itemSelectionChanged()),this,SLOT(rowSelected()));
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| [1e1098] | 133 |   connect(this,SIGNAL(changed()),this,SLOT(update()));
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| [9d4f964] | 134 |   connect(this,SIGNAL(needsRefill()),this,SLOT(refill()), Qt::QueuedConnection);
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 | 135 | 
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 | 136 |   emit needsRefill();
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| [1e1098] | 137 | }
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 | 138 | 
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 | 139 | QtHomologyList::~QtHomologyList()
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 | 140 | {
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| [3b1798] | 141 |   QSettings settings;
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 | 142 |   settings.beginGroup("QtHomologyList");
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 | 143 |   settings.setValue("treewidget_size", treewidget->size());
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 | 144 |   settings.setValue("plotwidget_size", widget->size());
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 | 145 |   settings.endGroup();
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 | 146 | 
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 | 147 | 
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| [3c9ac3] | 148 |   if (homologycontainer_enabled) {
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 | 149 |     HomologyContainer &homologies = World::getInstance().getHomologies();
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 | 150 |     homologies.signOff(this);
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 | 151 |   }
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| [f0964c] | 152 |   if (potentialregistry_enabled)
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 | 153 |     PotentialRegistry::getInstance().signOff(this);
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| [1e1098] | 154 | }
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 | 155 | 
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| [7516f6] | 156 | void QtHomologyList::update(Observable *publisher)
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 | 157 | {
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| [1e1098] | 158 |   dirty = true;
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 | 159 | 
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 | 160 |   // force an update from Qt...
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| [b677ab] | 161 | //  treewidget->clear();
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 | 162 |   emit changed(); //doesn't work!?!
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| [1e1098] | 163 | }
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 | 164 | 
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 | 165 | void QtHomologyList::refill()
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 | 166 | {
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| [7516f6] | 167 |   boost::recursive_mutex::scoped_lock lock(refill_mutex);
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 | 168 | 
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| [1e1098] | 169 |   const HomologyContainer &homologies = World::getInstance().getHomologies();
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 | 170 | 
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 | 171 |   // clear everything
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 | 172 |   HomologySelection.clear();
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| [a8f5d94] | 173 |   treewidget->clear();
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| [b677ab] | 174 | #ifdef HAVE_QWT
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 | 175 |   QSeisCurveRegistry::getInstance().resetRegistry();
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 | 176 | #endif
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| [1e1098] | 177 | 
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 | 178 |   size_t count = 0;
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| [b677ab] | 179 |   for (HomologyContainer::const_key_iterator homologyiter = homologies.key_begin();
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 | 180 |       homologyiter != homologies.key_end();
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 | 181 |       homologyiter = homologies.getNextKey(homologyiter), ++count) {
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 | 182 |     HomologyContainer::range_t occurences = homologies.getHomologousGraphs(*homologyiter);
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| [1e1098] | 183 |     const HomologyGraph &graph = occurences.first->first;
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 | 184 |     const size_t times = std::distance(occurences.first, occurences.second);
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 | 185 | 
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| [b677ab] | 186 |     // create item
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| [4aed01] | 187 |     std::vector<int> numerical_columns;
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 | 188 |     numerical_columns += OCCURRENCE;
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 | 189 |     QTreeWidgetItem *treeItem = new QtNumericalItem(NUMBER, numerical_columns, treewidget);
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| [1e1098] | 190 |     treeItem->setText(NUMBER, QString::number(count));
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 | 191 |     {
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 | 192 |       std::stringstream output;
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 | 193 |       graph.printNodes(output);
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 | 194 |       treeItem->setText(NODES, QString(output.str().c_str()));
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 | 195 |     }
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 | 196 |     {
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 | 197 |       std::stringstream output;
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 | 198 |       graph.printEdges(output);
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 | 199 |       treeItem->setText(EDGES, QString(output.str().c_str()));
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 | 200 |     }
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 | 201 |     if (times > 0) {
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 | 202 |       treeItem->setText(OCCURRENCE, QString::number(times));
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 | 203 |     } else {
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 | 204 |       treeItem->setText(OCCURRENCE, "none");
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 | 205 |       treeItem->setDisabled(true);
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 | 206 |     }
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 | 207 |     HomologySelection.push_back(treeItem->isSelected());
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| [b677ab] | 208 | 
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 | 209 | #ifdef HAVE_QWT
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 | 210 |     // create associated curve in plot
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 | 211 |     CompoundPotential *compound = new CompoundPotential(graph);
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 | 212 |     ASSERT( compound != NULL,
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 | 213 |         "QtHomologyList::refill() - compound is NULL.");
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 | 214 |     TrainingData data(compound->getSpecificFilter());
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 | 215 |     data(homologies.getHomologousGraphs(graph));
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 | 216 |     if (!data.getTrainingInputs().empty()) {
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 | 217 |       // generate QSeisData
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| [e1fe7e] | 218 |       const TrainingData::InputVector_t &inputs = data.getAllArguments();
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| [b677ab] | 219 |       const TrainingData::OutputVector_t &outputs = data.getTrainingOutputs();
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 | 220 |       std::vector<double> xvalues;
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 | 221 |       std::vector<double> yvalues;
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 | 222 | 
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 | 223 |       // go through each potential
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 | 224 |       for (CompoundPotential::models_t::const_iterator potiter = compound->begin();
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 | 225 |           potiter != compound->end();
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 | 226 |           ++potiter) {
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 | 227 |         const EmpiricalPotential &potential = dynamic_cast<const EmpiricalPotential &>(**potiter);
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 | 228 |         const std::string potentialname = potential.getName();
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| [9bdcc9] | 229 |         const FunctionModel::filter_t filter = potential.getSpecificFilter();
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| [b677ab] | 230 |         Coordinator::ptr coordinator = potential.getCoordinator();
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 | 231 |         // then we need to sample the potential
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| [e60558] | 232 |         HomologyGraph dummy;
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| [476781] | 233 | 
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| [b677ab] | 234 |         xvalues.clear();
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| [476781] | 235 |         yvalues.clear();
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 | 236 |         for (TrainingData::OutputVector_t::const_iterator outputiter = outputs.begin();
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 | 237 |             outputiter != outputs.end(); ++outputiter)
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 | 238 |           yvalues.push_back((*outputiter)[0]);
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| [b677ab] | 239 |         for (TrainingData::InputVector_t::const_iterator inputiter = inputs.begin();
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| [9bdcc9] | 240 |             inputiter != inputs.end(); ++inputiter) {
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| [e60558] | 241 |           const FunctionModel::list_of_arguments_t specificargs = filter(dummy, *inputiter);
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| [9bdcc9] | 242 |           double average = 0.;
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 | 243 |           for (FunctionModel::list_of_arguments_t::const_iterator argiter = specificargs.begin();
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 | 244 |               argiter != specificargs.end(); ++argiter) {
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 | 245 |             const FunctionModel::arguments_t args = *argiter;
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 | 246 |             average += (*coordinator)(args);
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 | 247 |           }
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| [476781] | 248 |           const size_t index =  xvalues.size();
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| [9bdcc9] | 249 |           if (specificargs.size() > 1) {
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 | 250 |             xvalues.push_back(average/(double)specificargs.size());
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| [476781] | 251 |           } else if (specificargs.size() == 1) {
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 | 252 |             xvalues.push_back(average);
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 | 253 |           } else {
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 | 254 |             xvalues.push_back(index/0.1);
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| [9bdcc9] | 255 |           }
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 | 256 |         }
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 | 257 | 
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 | 258 |         // We need to sort the xvalues (and associated yvalues also)
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| [b677ab] | 259 |         std::vector<double>::const_iterator xiter = xvalues.begin();
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 | 260 |         std::vector<double>::const_iterator yiter = yvalues.begin();
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 | 261 |         std::map<double, std::set<double> > sorted_xy;
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 | 262 |         for (;xiter != xvalues.end(); ++xiter, ++yiter) {
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 | 263 |           std::set<double> yset;
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 | 264 |           yset.insert(*yiter);
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 | 265 |           std::pair<std::map<double, std::set<double> >::iterator, bool> inserter =
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 | 266 |               sorted_xy.insert(std::make_pair(*xiter, yset));
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 | 267 |           if (!inserter.second)
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 | 268 |             inserter.first->second.insert(*yiter);
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 | 269 |         }
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 | 270 |         xvalues.clear();
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 | 271 |         yvalues.clear();
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 | 272 |         for (std::map<double, std::set<double> >::const_iterator iter = sorted_xy.begin();
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 | 273 |             iter != sorted_xy.end(); ++iter) {
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 | 274 |           for (std::set<double>::const_iterator valueiter = iter->second.begin();
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 | 275 |               valueiter != iter->second.end();
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 | 276 |               ++valueiter) {
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 | 277 |             xvalues.push_back(iter->first);
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 | 278 |             yvalues.push_back(*valueiter);
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 | 279 |           }
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 | 280 |         }
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 | 281 | 
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| [d88397] | 282 |         if ((!xvalues.empty()) && (!yvalues.empty())) {
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 | 283 |           QSeisData data(xvalues, yvalues, QString(potentialname.c_str()));
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 | 284 |           // couple to QSeisPlotCurve and register the curve
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 | 285 |           QSeisPlotCurve *curve = new QSeisPlotCurve(QString(potentialname.c_str()), "energy");
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 | 286 |           curve->updateCurve(&data);
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 | 287 |           if (!QSeisCurveRegistry::getInstance().isPresentByName(curve->getName()))
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 | 288 |             QSeisCurveRegistry::getInstance().registerInstance(curve);
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 | 289 |           else
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 | 290 |             delete curve;
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 | 291 |         }
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| [b677ab] | 292 |       }
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 | 293 |     }
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 | 294 | #endif
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| [1e1098] | 295 |   }
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 | 296 |   dirty = false;
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 | 297 | }
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 | 298 | 
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 | 299 | void QtHomologyList::paintEvent(QPaintEvent * event)
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 | 300 | {
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| [7516f6] | 301 |   boost::recursive_mutex::scoped_lock lock(refill_mutex);
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 | 302 | 
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| [1e1098] | 303 |   if (dirty)
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 | 304 |     refill();
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| [a8f5d94] | 305 | //  treewidget->paintEvent(event);
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| [1e1098] | 306 | }
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 | 307 | 
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 | 308 | void QtHomologyList::subjectKilled(Observable *publisher)
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 | 309 | {
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 | 310 |   // as a new instance should always already be present ... just sign on
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| [f0964c] | 311 |   if (static_cast<PotentialRegistry *>(publisher) == PotentialRegistry::getPointer()) {
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 | 312 |     potentialregistry_enabled = false;
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| [3c9ac3] | 313 |   } else if (static_cast<HomologyContainer *>(publisher) == &World::getInstance().getHomologies()) {
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 | 314 |     homologycontainer_enabled = false;
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| [f0964c] | 315 |   }
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| [1e1098] | 316 | }
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 | 317 | 
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 | 318 | 
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 | 319 | void QtHomologyList::rowSelected()
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 | 320 | {
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| [7516f6] | 321 |   boost::recursive_mutex::scoped_lock lock(refill_mutex);
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 | 322 | 
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| [1e1098] | 323 |   //std::cout << "rowSelected\n";
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| [a8f5d94] | 324 |   for (int i=0;i<treewidget->topLevelItemCount();i++){
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 | 325 |     QTreeWidgetItem *item = treewidget->topLevelItem(i);
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| [1e1098] | 326 |     bool newSelection = item->isSelected();
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 | 327 |     if (newSelection != HomologySelection[i]){
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| [b677ab] | 328 |       // TODO: Add selected curve to QTabWidget
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| [1e1098] | 329 |     }
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 | 330 |   }
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 | 331 | }
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 | 332 | 
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