| 1 | /*
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| 2 |  * Project: MoleCuilder
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| 3 |  * Description: creates and alters molecular systems
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| 4 |  * Copyright (C)  2010-2012 University of Bonn. All rights reserved.
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| 5 |  * 
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| 6 |  *
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| 7 |  *   This file is part of MoleCuilder.
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| 8 |  *
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| 9 |  *    MoleCuilder is free software: you can redistribute it and/or modify
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| 10 |  *    it under the terms of the GNU General Public License as published by
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| 11 |  *    the Free Software Foundation, either version 2 of the License, or
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| 12 |  *    (at your option) any later version.
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| 13 |  *
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| 14 |  *    MoleCuilder is distributed in the hope that it will be useful,
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| 15 |  *    but WITHOUT ANY WARRANTY; without even the implied warranty of
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| 16 |  *    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
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| 17 |  *    GNU General Public License for more details.
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| 18 |  *
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| 19 |  *    You should have received a copy of the GNU General Public License
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| 20 |  *    along with MoleCuilder.  If not, see <http://www.gnu.org/licenses/>.
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| 21 |  */
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| 22 | 
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| 23 | /*
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| 24 |  * TextWindow.cpp
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| 25 |  *
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| 26 |  *  Created on: Jan 7, 2010
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| 27 |  *      Author: crueger
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| 28 |  */
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| 29 | 
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| 30 | // include config.h
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| 31 | #ifdef HAVE_CONFIG_H
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| 32 | #include <config.h>
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| 33 | #endif
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| 34 | 
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| 35 | #include "CodePatterns/MemDebug.hpp"
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| 36 | 
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| 37 | #include <boost/bind.hpp>
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| 38 | #include <boost/shared_ptr.hpp>
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| 39 | 
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| 40 | #include "Menu/TextMenu/TextMenu.hpp"
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| 41 | #include "Menu/TextMenu/TxMenu.hpp"
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| 42 | #include "Menu/TextMenu/ActionMenuItem.hpp"
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| 43 | #include "Menu/TextMenu/SeparatorMenuItem.hpp"
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| 44 | #include "Menu/TextMenu/DisplayMenuItem.hpp"
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| 45 | #include "Menu/TextMenu/SubMenuItem.hpp"
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| 46 | #include "TextUI/TextStatusIndicator.hpp"
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| 47 | #include "TextUI/TextWindow.hpp"
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| 48 | #include "Actions/MethodAction.hpp"
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| 49 | #include "Actions/ErrorAction.hpp"
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| 50 | #include "Actions/ActionQueue.hpp"
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| 51 | #include "Actions/ActionTrait.hpp"
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| 52 | #include "Element/element.hpp"
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| 53 | #include "Element/periodentafel.hpp"
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| 54 | #include "molecule.hpp"
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| 55 | #include "Parser/ChangeTracker.hpp"
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| 56 | #include "Views/StreamStringView.hpp"
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| 57 | #include "Views/MethodStringView.hpp"
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| 58 | #include "World.hpp"
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| 59 | 
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| 60 | #include "Helpers/defs.hpp"
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| 61 | #include "CodePatterns/Log.hpp"
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| 62 | #include "CodePatterns/Verbose.hpp"
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| 63 | 
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| 64 | #include <iostream>
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| 65 | #include <map>
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| 66 | 
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| 67 | using namespace MoleCuilder;
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| 68 | 
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| 69 | // TODO: see what code can be moved to a base class for Graphic and Text Windows
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| 70 | TextWindow::TextWindow()
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| 71 | {
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| 72 |   // build the main menu
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| 73 |   main_menu = new TextMenu<TxMenu>(std::cout, "");
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| 74 |   // reserve s for save and q for quite
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| 75 |   main_menu->reserveShortcut('s', "output");
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| 76 |   main_menu->reserveShortcut('q', "quit");
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| 77 | 
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| 78 |   moleculeView = new StreamStringView(boost::bind(&TextWindow::Enumerate,this,_1));
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| 79 |   new DisplayMenuItem(main_menu->getMenuInstance(),moleculeView,"Molecule List");
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| 80 | 
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| 81 |   new SeparatorMenuItem(main_menu->getMenuInstance());
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| 82 | 
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| 83 |   main_menu->init();
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| 84 | 
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| 85 |   new SeparatorMenuItem(main_menu->getMenuInstance());
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| 86 | 
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| 87 |   // save has reserved key 's'
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| 88 | //  const Action &saveConfigAction = ActionQueue::getInstance().getActionByName("output");
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| 89 |   new ActionMenuItem('s',"save current setup to config files",main_menu->getMenuInstance(),"output");
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| 90 | 
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| 91 |   // create a specific quit action for this UI and store in registry
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| 92 |   ActionTrait quitTrait(OptionTrait("quit", &typeid(void), "quits the program"));
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| 93 |   quitAction = new MethodAction(quitTrait,boost::bind(&TxMenu::doQuit,main_menu->getMenuInstance()));
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| 94 |   MoleCuilder::ActionQueue::getInstance().registerAction(quitAction);
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| 95 |   new ActionMenuItem('q',"quit",main_menu->getMenuInstance(),"quit");
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| 96 | 
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| 97 |   // Add status indicators etc...
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| 98 |   statusIndicator = new TextStatusIndicator();
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| 99 | }
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| 100 | 
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| 101 | void TextWindow::Enumerate(std::ostream *out)
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| 102 | {
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| 103 |   periodentafel *periode = World::getInstance().getPeriode();
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| 104 |   std::vector<molecule *> allmolecules = World::getInstance().getAllMolecules();
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| 105 |   std::map<atomicNumber_t,unsigned int> counts;
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| 106 |   double size=0;
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| 107 |   Vector Origin;
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| 108 | 
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| 109 |   // header
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| 110 |   (*out) << "Index\tName\t\tAtoms\tFormula\tCenter\tSize" << endl;
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| 111 |   (*out) << "-----------------------------------------------" << endl;
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| 112 |   if (allmolecules.size() == 0)
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| 113 |     (*out) << "\tNone" << endl;
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| 114 |   else {
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| 115 |     Origin.Zero();
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| 116 |     for (std::vector<molecule *>::const_iterator ListRunner = allmolecules.begin();
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| 117 |         ListRunner != allmolecules.end(); ListRunner++) {
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| 118 |       // count atoms per element and determine size of bounding sphere
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| 119 |       size=0.;
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| 120 |       const molecule *MolRunner = *ListRunner;
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| 121 |       for (molecule::const_iterator iter = MolRunner->begin(); iter != MolRunner->end(); ++iter) {
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| 122 |         counts[(*iter)->getType()->getAtomicNumber()]++;
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| 123 |         if ((*iter)->DistanceSquared(Origin) > size)
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| 124 |           size = (*iter)->DistanceSquared(Origin);
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| 125 |       }
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| 126 |       // output Index, Name, number of atoms, chemical formula
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| 127 |       (*out) << (MolRunner->ActiveFlag ? "*" : " ") << MolRunner->IndexNr << "\t" << MolRunner->name << "\t\t" << MolRunner->getAtomCount() << "\t";
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| 128 | 
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| 129 |       std::map<atomicNumber_t,unsigned int>::reverse_iterator iter;
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| 130 |       for(iter=counts.rbegin(); iter!=counts.rend();++iter){
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| 131 |         atomicNumber_t Z =(*iter).first;
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| 132 |         (*out) << periode->FindElement(Z)->getSymbol() << (*iter).second;
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| 133 |       }
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| 134 |       // Center and size
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| 135 |       Vector Center = MolRunner->DetermineCenterOfAll();
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| 136 |       (*out) << "\t" << Center << "\t" << sqrt(size) << endl;
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| 137 |     }
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| 138 |   }
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| 139 | }
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| 140 | 
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| 141 | TextWindow::~TextWindow()
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| 142 | {
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| 143 |   delete moleculeView;
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| 144 |   delete statusIndicator;
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| 145 |   delete main_menu;
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| 146 | }
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| 147 | 
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| 148 | void TextWindow::display() {
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| 149 |   main_menu->display();
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| 150 | }
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| 151 | 
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