| [bcf653] | 1 | /*
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 | 2 |  * Project: MoleCuilder
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 | 3 |  * Description: creates and alters molecular systems
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| [0aa122] | 4 |  * Copyright (C)  2010-2012 University of Bonn. All rights reserved.
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| [bcf653] | 5 |  * Please see the LICENSE file or "Copyright notice" in builder.cpp for details.
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 | 6 |  */
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 | 7 | 
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| [997784] | 8 | /*
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 | 9 |  * Shape.cpp
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 | 10 |  *
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 | 11 |  *  Created on: Jun 18, 2010
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 | 12 |  *      Author: crueger
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 | 13 |  */
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 | 14 | 
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| [bf3817] | 15 | // include config.h
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 | 16 | #ifdef HAVE_CONFIG_H
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 | 17 | #include <config.h>
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 | 18 | #endif
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 | 19 | 
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| [ad011c] | 20 | #include "CodePatterns/MemDebug.hpp"
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| [997784] | 21 | 
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| [ad011c] | 22 | #include "CodePatterns/Assert.hpp"
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| [6c438f] | 23 | #include "LinearAlgebra/Vector.hpp"
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 | 24 | 
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| [b94634] | 25 | #include "Shapes/Shape.hpp"
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 | 26 | #include "Shapes/Shape_impl.hpp"
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 | 27 | #include "Shapes/ShapeExceptions.hpp"
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| [b92e4a] | 28 | #include "Shapes/ShapeType.hpp"
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| [5de9da] | 29 | 
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| [6acc2f3] | 30 | #include <algorithm>
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 | 31 | #include <limits>
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| [cfda65] | 32 | #include <string>
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 | 33 | 
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 | 34 | 
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| [997784] | 35 | Shape::Shape(const Shape& src) :
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 | 36 |   impl(src.getImpl())
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 | 37 | {}
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 | 38 | 
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 | 39 | Shape::~Shape(){}
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 | 40 | 
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| [205d9b] | 41 | bool Shape::isInside(const Vector &point) const{
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| [997784] | 42 |   return impl->isInside(point);
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 | 43 | }
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 | 44 | 
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| [5de9da] | 45 | bool Shape::isOnSurface(const Vector &point) const{
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 | 46 |   return impl->isOnSurface(point);
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 | 47 | }
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 | 48 | 
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 | 49 | Vector Shape::getNormal(const Vector &point) const throw (NotOnSurfaceException){
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 | 50 |   return impl->getNormal(point);
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 | 51 | }
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 | 52 | 
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| [6acc2f3] | 53 | Vector Shape::getCenter() const{
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 | 54 |   return impl->getCenter();
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 | 55 | }
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 | 56 | 
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 | 57 | double Shape::getRadius() const{
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 | 58 |   return impl->getRadius();
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 | 59 | }
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 | 60 | 
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| [735940] | 61 | LineSegmentSet Shape::getLineIntersections(const Line &line) const{
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| [c6f395] | 62 |   return impl->getLineIntersections(line);
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 | 63 | }
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 | 64 | 
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| [9c1c89] | 65 | std::vector<Vector> Shape::getHomogeneousPointsOnSurface(const size_t N) const {
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| [c5186e] | 66 |   return impl->getHomogeneousPointsOnSurface(N);
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 | 67 | }
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 | 68 | 
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| [5a8d61] | 69 | std::vector<Vector> Shape::getHomogeneousPointsInVolume(const size_t N) const {
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 | 70 |         return impl->getHomogeneousPointsInVolume(N);
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 | 71 | }
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 | 72 | 
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| [997784] | 73 | Shape::Shape(Shape::impl_ptr _impl) :
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 | 74 |     impl(_impl)
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 | 75 | {}
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 | 76 | 
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 | 77 | Shape &Shape::operator=(const Shape& rhs){
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 | 78 |   if(&rhs!=this){
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 | 79 |     impl=rhs.getImpl();
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 | 80 |   }
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 | 81 |   return *this;
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 | 82 | }
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 | 83 | 
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| [b92e4a] | 84 | bool Shape::operator==(const Shape &rhs) const{
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 | 85 |         return (this->getType() == rhs.getType());
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 | 86 | }
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 | 87 | 
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| [cfda65] | 88 | std::string Shape::toString() const{
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 | 89 |   return impl->toString();
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 | 90 | }
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 | 91 | 
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| [b92e4a] | 92 | enum ShapeType Shape::getType() const{
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 | 93 |         return impl->getType();
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 | 94 | }
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 | 95 | 
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| [997784] | 96 | Shape::impl_ptr Shape::getImpl() const{
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 | 97 |   return impl;
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 | 98 | }
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 | 99 | 
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| [e09b70] | 100 | // allows arbitrary friendship, but only if implementation is known
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 | 101 | Shape::impl_ptr getShapeImpl(const Shape &shape){
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 | 102 |   return shape.getImpl();
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 | 103 | }
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 | 104 | 
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| [997784] | 105 | /***************************** Some simple Shapes ***************************/
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 | 106 | 
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 | 107 | Shape Everywhere(){
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 | 108 |   static Shape::impl_ptr impl = Shape::impl_ptr(new Everywhere_impl());
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 | 109 |   return Shape(impl);
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 | 110 | }
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 | 111 | 
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 | 112 | Shape Nowhere(){
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 | 113 |   static Shape::impl_ptr impl = Shape::impl_ptr(new Nowhere_impl());
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 | 114 |   return Shape(impl);
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 | 115 | }
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 | 116 | 
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 | 117 | /****************************** Operators ***********************************/
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 | 118 | 
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 | 119 | // AND
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 | 120 | 
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 | 121 | AndShape_impl::AndShape_impl(const Shape::impl_ptr &_lhs, const Shape::impl_ptr &_rhs) :
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 | 122 |   lhs(_lhs),rhs(_rhs)
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 | 123 | {}
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 | 124 | 
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 | 125 | AndShape_impl::~AndShape_impl(){}
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 | 126 | 
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| [735940] | 127 | bool AndShape_impl::isInside(const Vector &point) const{
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| [997784] | 128 |   return lhs->isInside(point) && rhs->isInside(point);
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 | 129 | }
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 | 130 | 
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| [735940] | 131 | bool AndShape_impl::isOnSurface(const Vector &point) const{
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| [5de9da] | 132 |   // check the number of surfaces that this point is on
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 | 133 |   int surfaces =0;
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 | 134 |   surfaces += lhs->isOnSurface(point);
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 | 135 |   surfaces += rhs->isOnSurface(point);
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 | 136 | 
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 | 137 |   switch(surfaces){
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 | 138 |     case 0:
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 | 139 |       return false;
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 | 140 |       // no break necessary
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 | 141 |     case 1:
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 | 142 |       // if it is inside for the object where it does not lie on
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 | 143 |       // the surface the whole point lies inside
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| [ef84ca] | 144 |       return (lhs->isOnSurface(point) && rhs->isInside(point)) ||
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 | 145 |              (rhs->isOnSurface(point) && lhs->isInside(point));
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| [5de9da] | 146 |       // no break necessary
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 | 147 |     case 2:
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 | 148 |       {
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 | 149 |         // it lies on both Shapes... could be an edge or an inner point
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 | 150 |         // test the direction of the normals
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 | 151 |         Vector direction=lhs->getNormal(point)+rhs->getNormal(point);
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 | 152 |         // if the directions are opposite we lie on the inside
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 | 153 |         return !direction.IsZero();
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 | 154 |       }
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 | 155 |       // no break necessary
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 | 156 |     default:
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 | 157 |       // if this happens there is something wrong
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 | 158 |       ASSERT(0,"Default case should have never been used");
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 | 159 |   }
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 | 160 |   return false; // never reached
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 | 161 | }
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 | 162 | 
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| [735940] | 163 | Vector AndShape_impl::getNormal(const Vector &point) const throw (NotOnSurfaceException){
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| [5de9da] | 164 |   Vector res;
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 | 165 |   if(!isOnSurface(point)){
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| [b94634] | 166 |     throw NotOnSurfaceException() << ShapeVector(&point);
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| [5de9da] | 167 |   }
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 | 168 |   res += lhs->isOnSurface(point)?lhs->getNormal(point):zeroVec;
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 | 169 |   res += rhs->isOnSurface(point)?rhs->getNormal(point):zeroVec;
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 | 170 |   res.Normalize();
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 | 171 |   return res;
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 | 172 | }
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 | 173 | 
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| [6acc2f3] | 174 | Vector AndShape_impl::getCenter() const
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 | 175 | {
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 | 176 |   // calculate closest position on sphere surface to other center ..
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 | 177 |   const Vector rhsDistance = rhs->getCenter() + rhs->getRadius()*((lhs->getCenter() - rhs->getCenter()).getNormalized());
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 | 178 |   const Vector lhsDistance = lhs->getCenter() + lhs->getRadius()*((rhs->getCenter() - lhs->getCenter()).getNormalized());
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 | 179 |   // .. and then it's right in between those two
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 | 180 |   return 0.5*(rhsDistance + lhsDistance);
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 | 181 | }
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 | 182 | 
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 | 183 | double AndShape_impl::getRadius() const
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 | 184 | {
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 | 185 |   const double distance = (lhs->getCenter() - rhs->getCenter()).Norm();
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 | 186 |   const double minradii = std::min(lhs->getRadius(), rhs->getRadius());
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 | 187 |   // if no intersection
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 | 188 |   if (distance > (lhs->getRadius() + rhs->getRadius()))
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 | 189 |     return 0.;
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 | 190 |   else // if intersection it can only be the smaller one
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 | 191 |     return minradii;
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 | 192 | }
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 | 193 | 
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| [735940] | 194 | LineSegmentSet AndShape_impl::getLineIntersections(const Line &line) const{
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| [c6f395] | 195 |   return intersect(lhs->getLineIntersections(line),rhs->getLineIntersections(line));
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 | 196 | }
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 | 197 | 
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| [b92e4a] | 198 | std::string AndShape_impl::toString() const{
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| [955b91] | 199 |   return std::string("(") + lhs->toString() + std::string("&&") + rhs->toString() + std::string(")");
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| [cfda65] | 200 | }
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 | 201 | 
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| [b92e4a] | 202 | enum ShapeType AndShape_impl::getType() const{
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 | 203 |         return CombinedType;
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 | 204 | }
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 | 205 | 
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| [9c1c89] | 206 | std::vector<Vector> AndShape_impl::getHomogeneousPointsOnSurface(const size_t N) const {
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| [23bade] | 207 |   std::vector<Vector> PointsOnSurface_lhs = lhs->getHomogeneousPointsOnSurface(N);
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 | 208 |   std::vector<Vector> PointsOnSurface_rhs = rhs->getHomogeneousPointsOnSurface(N);
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| [c5186e] | 209 |   std::vector<Vector> PointsOnSurface;
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| [23bade] | 210 | 
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 | 211 |   for (std::vector<Vector>::const_iterator iter = PointsOnSurface_lhs.begin(); iter != PointsOnSurface_lhs.end(); ++iter) {
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 | 212 |     if (rhs->isInside(*iter))
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 | 213 |       PointsOnSurface.push_back(*iter);
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 | 214 |   }
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 | 215 |   for (std::vector<Vector>::const_iterator iter = PointsOnSurface_rhs.begin(); iter != PointsOnSurface_rhs.end(); ++iter) {
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 | 216 |     if (lhs->isInside(*iter))
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 | 217 |       PointsOnSurface.push_back(*iter);
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 | 218 |   }
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 | 219 | 
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| [c5186e] | 220 |   return PointsOnSurface;
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 | 221 | }
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 | 222 | 
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| [5a8d61] | 223 | std::vector<Vector> AndShape_impl::getHomogeneousPointsInVolume(const size_t N) const {
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 | 224 |         ASSERT(0,
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 | 225 |                         "AndShape_impl::getHomogeneousPointsInVolume() - not implemented.");
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 | 226 |         return std::vector<Vector>();
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 | 227 | }
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 | 228 | 
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| [c5186e] | 229 | 
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| [997784] | 230 | Shape operator&&(const Shape &lhs,const Shape &rhs){
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| [e09b70] | 231 |   Shape::impl_ptr newImpl = Shape::impl_ptr(new AndShape_impl(getShapeImpl(lhs),getShapeImpl(rhs)));
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| [997784] | 232 |   return Shape(newImpl);
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 | 233 | }
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 | 234 | 
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 | 235 | // OR
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 | 236 | 
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 | 237 | OrShape_impl::OrShape_impl(const Shape::impl_ptr &_lhs, const Shape::impl_ptr &_rhs) :
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 | 238 |   lhs(_lhs),rhs(_rhs)
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 | 239 | {}
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 | 240 | 
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 | 241 | OrShape_impl::~OrShape_impl(){}
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 | 242 | 
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| [735940] | 243 | bool OrShape_impl::isInside(const Vector &point) const{
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| [997784] | 244 |   return rhs->isInside(point) || lhs->isInside(point);
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 | 245 | }
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 | 246 | 
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| [735940] | 247 | bool OrShape_impl::isOnSurface(const Vector &point) const{
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| [5de9da] | 248 |   // check the number of surfaces that this point is on
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 | 249 |   int surfaces =0;
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 | 250 |   surfaces += lhs->isOnSurface(point);
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 | 251 |   surfaces += rhs->isOnSurface(point);
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 | 252 | 
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 | 253 |   switch(surfaces){
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 | 254 |     case 0:
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 | 255 |       return false;
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 | 256 |       // no break necessary
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 | 257 |     case 1:
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 | 258 |       // if it is inside for the object where it does not lie on
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 | 259 |       // the surface the whole point lies inside
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| [ef84ca] | 260 |       return (lhs->isOnSurface(point) && !rhs->isInside(point)) ||
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 | 261 |              (rhs->isOnSurface(point) && !lhs->isInside(point));
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| [5de9da] | 262 |       // no break necessary
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 | 263 |     case 2:
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 | 264 |       {
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 | 265 |         // it lies on both Shapes... could be an edge or an inner point
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 | 266 |         // test the direction of the normals
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 | 267 |         Vector direction=lhs->getNormal(point)+rhs->getNormal(point);
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 | 268 |         // if the directions are opposite we lie on the inside
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 | 269 |         return !direction.IsZero();
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 | 270 |       }
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 | 271 |       // no break necessary
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 | 272 |     default:
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 | 273 |       // if this happens there is something wrong
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 | 274 |       ASSERT(0,"Default case should have never been used");
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 | 275 |   }
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 | 276 |   return false; // never reached
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 | 277 | }
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 | 278 | 
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| [735940] | 279 | Vector OrShape_impl::getNormal(const Vector &point) const throw (NotOnSurfaceException){
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| [5de9da] | 280 |   Vector res;
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 | 281 |   if(!isOnSurface(point)){
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| [b94634] | 282 |     throw NotOnSurfaceException() << ShapeVector(&point);
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| [5de9da] | 283 |   }
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 | 284 |   res += lhs->isOnSurface(point)?lhs->getNormal(point):zeroVec;
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 | 285 |   res += rhs->isOnSurface(point)?rhs->getNormal(point):zeroVec;
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 | 286 |   res.Normalize();
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 | 287 |   return res;
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 | 288 | }
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 | 289 | 
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| [6acc2f3] | 290 | Vector OrShape_impl::getCenter() const
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 | 291 | {
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 | 292 |   // calculate furthest position on sphere surface to other center ..
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 | 293 |   const Vector rhsDistance = rhs->getCenter() + rhs->getRadius()*((rhs->getCenter() - lhs->getCenter()).getNormalized());
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 | 294 |   const Vector lhsDistance = lhs->getCenter() + lhs->getRadius()*((lhs->getCenter() - rhs->getCenter()).getNormalized());
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 | 295 |   // .. and then it's right in between those two
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 | 296 |   return .5*(rhsDistance + lhsDistance);
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 | 297 | }
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 | 298 | 
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 | 299 | double OrShape_impl::getRadius() const
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 | 300 | {
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 | 301 |   const Vector rhsDistance = rhs->getCenter() + rhs->getRadius()*((rhs->getCenter() - lhs->getCenter()).getNormalized());
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 | 302 |   const Vector lhsDistance = lhs->getCenter() + lhs->getRadius()*((lhs->getCenter() - rhs->getCenter()).getNormalized());
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 | 303 |   return .5*(rhsDistance - lhsDistance).Norm();
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 | 304 | }
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 | 305 | 
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| [735940] | 306 | LineSegmentSet OrShape_impl::getLineIntersections(const Line &line) const{
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| [c6f395] | 307 |   return merge(lhs->getLineIntersections(line),rhs->getLineIntersections(line));
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 | 308 | }
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 | 309 | 
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| [b92e4a] | 310 | std::string OrShape_impl::toString() const{
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| [955b91] | 311 |   return std::string("(") + lhs->toString() + std::string("||") + rhs->toString() + std::string(")");
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| [cfda65] | 312 | }
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 | 313 | 
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| [b92e4a] | 314 | enum ShapeType OrShape_impl::getType() const{
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 | 315 |         return CombinedType;
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 | 316 | }
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 | 317 | 
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| [9c1c89] | 318 | std::vector<Vector> OrShape_impl::getHomogeneousPointsOnSurface(const size_t N) const {
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| [c5186e] | 319 |   std::vector<Vector> PointsOnSurface_lhs = lhs->getHomogeneousPointsOnSurface(N);
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 | 320 |   std::vector<Vector> PointsOnSurface_rhs = rhs->getHomogeneousPointsOnSurface(N);
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 | 321 |   std::vector<Vector> PointsOnSurface;
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 | 322 | 
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 | 323 |   for (std::vector<Vector>::const_iterator iter = PointsOnSurface_lhs.begin(); iter != PointsOnSurface_lhs.end(); ++iter) {
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 | 324 |     if (!rhs->isInside(*iter))
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 | 325 |       PointsOnSurface.push_back(*iter);
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 | 326 |   }
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 | 327 |   for (std::vector<Vector>::const_iterator iter = PointsOnSurface_rhs.begin(); iter != PointsOnSurface_rhs.end(); ++iter) {
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 | 328 |     if (!lhs->isInside(*iter))
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 | 329 |       PointsOnSurface.push_back(*iter);
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 | 330 |   }
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 | 331 | 
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 | 332 |   return PointsOnSurface;
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 | 333 | }
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 | 334 | 
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| [5a8d61] | 335 | std::vector<Vector> OrShape_impl::getHomogeneousPointsInVolume(const size_t N) const {
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 | 336 |         ASSERT(0,
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 | 337 |                         "OrShape_impl::getHomogeneousPointsInVolume() - not implemented.");
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 | 338 |         return std::vector<Vector>();
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 | 339 | }
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 | 340 | 
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| [997784] | 341 | Shape operator||(const Shape &lhs,const Shape &rhs){
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| [e09b70] | 342 |   Shape::impl_ptr newImpl = Shape::impl_ptr(new OrShape_impl(getShapeImpl(lhs),getShapeImpl(rhs)));
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| [997784] | 343 |   return Shape(newImpl);
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 | 344 | }
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 | 345 | 
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 | 346 | // NOT
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 | 347 | 
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 | 348 | NotShape_impl::NotShape_impl(const Shape::impl_ptr &_arg) :
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 | 349 |   arg(_arg)
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 | 350 | {}
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 | 351 | 
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 | 352 | NotShape_impl::~NotShape_impl(){}
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 | 353 | 
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| [735940] | 354 | bool NotShape_impl::isInside(const Vector &point) const{
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| [997784] | 355 |   return !arg->isInside(point);
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 | 356 | }
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 | 357 | 
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| [735940] | 358 | bool NotShape_impl::isOnSurface(const Vector &point) const{
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| [5de9da] | 359 |   return arg->isOnSurface(point);
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 | 360 | }
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 | 361 | 
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| [735940] | 362 | Vector NotShape_impl::getNormal(const Vector &point) const throw(NotOnSurfaceException){
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| [b94634] | 363 |   return -1.*arg->getNormal(point);
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| [5de9da] | 364 | }
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 | 365 | 
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| [6acc2f3] | 366 | Vector NotShape_impl::getCenter() const
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 | 367 | {
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 | 368 |   return arg->getCenter();
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 | 369 | }
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 | 370 | 
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 | 371 | double NotShape_impl::getRadius() const
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 | 372 | {
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 | 373 |   return std::numeric_limits<double>::infinity();
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 | 374 | }
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 | 375 | 
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| [735940] | 376 | LineSegmentSet NotShape_impl::getLineIntersections(const Line &line) const{
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| [c6f395] | 377 |   return invert(arg->getLineIntersections(line));
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 | 378 | }
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 | 379 | 
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| [b92e4a] | 380 | std::string NotShape_impl::toString() const{
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| [955b91] | 381 |   return std::string("!") + arg->toString();
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| [cfda65] | 382 | }
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 | 383 | 
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| [b92e4a] | 384 | enum ShapeType NotShape_impl::getType() const{
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 | 385 |         return CombinedType;
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 | 386 | }
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 | 387 | 
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| [9c1c89] | 388 | std::vector<Vector> NotShape_impl::getHomogeneousPointsOnSurface(const size_t N) const {
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| [c5186e] | 389 |   // surfaces are the same, only normal direction is different
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 | 390 |   return arg->getHomogeneousPointsOnSurface(N);
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 | 391 | }
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 | 392 | 
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| [5a8d61] | 393 | std::vector<Vector> NotShape_impl::getHomogeneousPointsInVolume(const size_t N) const {
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 | 394 |         ASSERT(0,
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 | 395 |                         "NotShape_impl::getHomogeneousPointsInVolume() - not implemented.");
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 | 396 |         return std::vector<Vector>();
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 | 397 | }
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 | 398 | 
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| [997784] | 399 | Shape operator!(const Shape &arg){
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| [e09b70] | 400 |   Shape::impl_ptr newImpl = Shape::impl_ptr(new NotShape_impl(getShapeImpl(arg)));
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| [997784] | 401 |   return Shape(newImpl);
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 | 402 | }
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| [cfda65] | 403 | 
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 | 404 | /**************** global operations *********************************/
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| [955b91] | 405 | std::ostream &operator<<(std::ostream &ost,const Shape &shape){
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| [cfda65] | 406 |   ost << shape.toString();
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 | 407 |   return ost;
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 | 408 | }
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