Fix_FitPartialCharges
      
      
        
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            Last change
 on this file since fdc567 was             cc6e5c, checked in by Frederik Heber <heber@…>, 11 years ago           | 
        
        
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Replaced Reactions by simple function exported to pyMoleCuilder. 
 
- Reactions are a bad idea from the start, calculations do not need to be
undone. Hence, why make them into an Action that is specifically undoable?
 - removed all Reaction..-related files.
 - removed ActinQueue::getLastAction().
 - removed CalculateBoundingBoxAction, CalculateCellVolumeAction, and
CalculateMolarMassAction, replaced by small function in Python folder.
 - TESTFIX: removed associated regression tests in Analysis.
 - modified boxmaker.py.in as names of functions changed.
 - removed Actions/pyMoleCuilder.cpp, is redunant with PythonScripting_impl.hpp.
  
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            File size:
            1.5 KB
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| 1 | /*
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| 2 |  * Project: MoleCuilder
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| 3 |  * Description: creates and alters molecular systems
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| 4 |  * Copyright (C)  2013 Frederik Heber. All rights reserved.
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| 5 |  * 
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| 6 |  *
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| 7 |  *   This file is part of MoleCuilder.
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| 8 |  *
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| 9 |  *    MoleCuilder is free software: you can redistribute it and/or modify
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| 10 |  *    it under the terms of the GNU General Public License as published by
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| 11 |  *    the Free Software Foundation, either version 2 of the License, or
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| 12 |  *    (at your option) any later version.
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| 13 |  *
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| 14 |  *    MoleCuilder is distributed in the hope that it will be useful,
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| 15 |  *    but WITHOUT ANY WARRANTY; without even the implied warranty of
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| 16 |  *    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
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| 17 |  *    GNU General Public License for more details.
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| 18 |  *
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| 19 |  *    You should have received a copy of the GNU General Public License
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| 20 |  *    along with MoleCuilder.  If not, see <http://www.gnu.org/licenses/>.
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| 21 |  */
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| 22 | 
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| 23 | /*
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| 24 |  * getDomainVolume.cpp
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| 25 |  *
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| 26 |  *  Created on: Sep 28, 2013
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| 27 |  *      Author: heber
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| 28 |  */
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| 29 | 
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| 30 | // include config.h
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| 31 | #ifdef HAVE_CONFIG_H
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| 32 | #include <config.h>
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| 33 | #endif
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| 34 | 
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| 35 | #include "CodePatterns/MemDebug.hpp"
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| 36 | 
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| 37 | #include "modules.hpp"
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| 38 | 
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| 39 | #include "CodePatterns/Log.hpp"
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| 40 | 
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| 41 | #include "Box.hpp"
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| 42 | #include "LinearAlgebra/RealSpaceMatrix.hpp"
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| 43 | #include "World.hpp"
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| 44 | 
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| 45 | #include <string>
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| 46 | 
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| 47 | double MoleCuilder::detail::module_getDomainVolume() {
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| 48 |   // calculate volume from Box
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| 49 |   Box &B = World::getInstance().getDomain();
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| 50 |   const RealSpaceMatrix &M = B.getM();
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| 51 |   const double volume = M.determinant();
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| 52 | 
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| 53 |   LOG(0, "RESULT: The current box volume is " << volume << ".");
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| 54 | 
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| 55 |   return volume;
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| 56 | }
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