[14de8e1] | 1 | /*
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| 2 | * PythonScripting.hpp
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| 3 | *
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| 4 | * Created on: Apr 13, 2012
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| 5 | * Author: heber
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| 6 | */
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| 7 |
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[06993e] | 8 | #ifndef PYTHONSCRIPTING_IMPL_HPP_
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| 9 | #define PYTHONSCRIPTING_IMPL_HPP_
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[14de8e1] | 10 |
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| 11 |
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| 12 | // include config.h
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| 13 | #ifdef HAVE_CONFIG_H
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| 14 | #include <config.h>
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| 15 | #endif
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| 16 |
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| 17 |
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| 18 | #include <boost/python.hpp>
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| 19 | #include <boost/python/module.hpp>
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| 20 | #include <boost/python/args.hpp>
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| 21 |
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[628577] | 22 | #include "CodePatterns/toString.hpp"
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| 23 |
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[cc6e5c] | 24 | // all "getter" functions
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| 25 | #include "modules.hpp"
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| 26 |
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[14de8e1] | 27 | //!> define all present actions
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| 28 | #include "GlobalListOfActions.hpp"
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| 29 |
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| 30 | //!> python wrapping for all of these actions
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| 31 | #include "AllActionPython.hpp"
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| 32 |
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| 33 | namespace MoleCuilder {
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| 34 |
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| 35 | namespace PythonTypes {
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| 36 |
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| 37 | inline void IndexError(){
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| 38 | PyErr_SetString(PyExc_IndexError, "Index out of range");
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| 39 | boost::python::throw_error_already_set();
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| 40 | }
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| 41 |
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| 42 | template<class T>
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| 43 | struct vec_item{
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| 44 | typedef typename T::value_type V;
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| 45 | static V& get(T& x, int i){
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| 46 | static V nothing;
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| 47 | if(i < 0) i += x.size();
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| 48 | if(i >= 0 && i < int(x.size())) return x[i];
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| 49 | IndexError();
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| 50 | return nothing;
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| 51 | }
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| 52 | static void set(T& x, int i, V const& v){
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| 53 | if(i < 0) i += x.size();
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| 54 | if(i >= 0 && i < int(x.size())) x[i] = v;
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| 55 | else IndexError();
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| 56 | }
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| 57 | static void del(T& x, int i){
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| 58 | if(i < 0) i += x.size();
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| 59 | if(i >= 0 && i < int(x.size())) x.erase(x.begin() + i);
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| 60 | else IndexError();
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| 61 | }
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| 62 | static void add(T& x, V const& v){
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| 63 | x.push_back(v);
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| 64 | }
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| 65 | };
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| 66 |
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| 67 |
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| 68 | } /* namespace PythonTypes */
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[cc6e5c] | 69 |
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[14de8e1] | 70 | } /* namespace MoleCuilder */
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| 71 |
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[cc6e5c] | 72 |
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[14de8e1] | 73 | BOOST_PYTHON_MODULE(pyMoleCuilder)
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| 74 | {
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[cc6e5c] | 75 | // from this moment on, we need to be sure to deeinitialize in the correct or
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| 76 | // this is handled by the cleanup function
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| 77 | atexit(MoleCuilder::detail::module_exit);
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| 78 |
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[14de8e1] | 79 | // set the docstring of the current module scope
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| 80 | boost::python::scope().attr("__doc__") = "pyMolecuilder are the python bindings to all Actions of the program suite MoleCuilder.\n\nMoleCuilder is a program to build molecular (dynamics) worlds, allowing you indefinite manipulation, control and analysis over the atoms and molecules within a simulation domain.";
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| 81 |
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[cc6e5c] | 82 | boost::python::def(
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| 83 | "reinit",
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| 84 | MoleCuilder::detail::module_reinit,
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| 85 | "Reinitializes the internal state of the python module as if it had been freshly imported,saves all input files beforehand."
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| 86 | );
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[415ddd] | 87 | boost::python::def(
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| 88 | "wait",
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| 89 | MoleCuilder::detail::module_wait,
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| 90 | "Waits until all currently queued actions have been processed."
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| 91 | );
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[cc6e5c] | 92 | boost::python::def< MoleCuilder::detail::doubleVec() >(
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| 93 | "getBoundingBox",
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| 94 | MoleCuilder::detail::module_getBoundingBox,
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| 95 | "returns the cuboid bounding box of the current domain."
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| 96 | );
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| 97 | boost::python::def< double() >(
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| 98 | "getDomainVolume",
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| 99 | MoleCuilder::detail::module_getDomainVolume,
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| 100 | "returns the volume of the simulation domain."
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| 101 | );
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| 102 | boost::python::def< double() >(
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| 103 | "getSelectedMolarMass",
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| 104 | MoleCuilder::detail::module_getSelectedMolarMass,
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| 105 | "returns the molar mass of all selected atoms."
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| 106 | );
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| 107 |
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[14de8e1] | 108 | // STL Vectors:
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| 109 | // doubleVec
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| 110 | boost::python::class_< std::vector< double > >("PythonType_doubleVec")
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| 111 | .def("__len__", &std::vector< double >::size)
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| 112 | .def("clear", &std::vector< double >::clear)
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| 113 | .def("append", &MoleCuilder::PythonTypes::vec_item< std::vector< double > >::add,
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| 114 | boost::python::with_custodian_and_ward<1, 2>()) // let container keep value
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| 115 | .def("__getitem__", &MoleCuilder::PythonTypes::vec_item< std::vector< double > >::get,
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| 116 | boost::python::return_value_policy<boost::python::copy_non_const_reference>())
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| 117 | .def("__setitem__", &MoleCuilder::PythonTypes::vec_item< std::vector< double > >::set,
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| 118 | boost::python::with_custodian_and_ward<1,2>()) // to let container keep value
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| 119 | .def("__delitem__", &MoleCuilder::PythonTypes::vec_item< std::vector< double > >::del)
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| 120 | .def("__iter__", boost::python::iterator< std::vector< double > >())
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| 121 | ;
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| 122 |
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[cc6e5c] | 123 | // access to all Actions
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[14de8e1] | 124 | #define export_print(z,n,list) \
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| 125 | BOOST_PP_CAT(export_, BOOST_PP_SEQ_ELEM(n, list))();
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[975b83] | 126 | #define BOOST_PP_LOCAL_MACRO(n) export_print(~, n, GLOBALLISTOFPYTHONACTIONS)
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| 127 | #define BOOST_PP_LOCAL_LIMITS (0, BOOST_PP_DEC(BOOST_PP_SEQ_SIZE(GLOBALLISTOFPYTHONACTIONS)))
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[14de8e1] | 128 | #include BOOST_PP_LOCAL_ITERATE()
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| 129 | #undef instance_print
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| 130 | }
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| 131 |
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| 132 |
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[06993e] | 133 | #endif /* PYTHONSCRIPTING_IMPL_HPP_ */
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