source: src/Potentials/Specifics/unittests/ThreeBodyPotential_AngleUnitTest.cpp@ 35d171

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Last change on this file since 35d171 was e1fe7e, checked in by Frederik Heber <heber@…>, 11 years ago

FunctionModel now uses list_of_arguments to split sequence of subsets of distances.

  • this fixes ambiguities with the set of distances: Imagine the distances within a water molecule as OH (A) and HH (B). We then may have a sequence of argument_t as AABAAB. And with the current implementation of CompoundPotential::splitUpArgumentsByModels() we would always choose the latter (and more complex) model. Hence, we make two calls to TriplePotential_Angle, instead of calls twice to PairPotential_Harmonic for A, one to PairPotential_Harmonic for B, and once to TriplePotential_Angle for AAB.
  • now, we new list looks like A,A,B,AAB where each tuple of distances can be uniquely associated with a specific potential.
  • changed signatures of EmpiricalPotential::operator(), ::derivative(), ::parameter_derivative(). This involved changing all of the current specific potentials and CompoundPotential.
  • TrainingData must discern between the InputVector_t (just all distances) and the FilteredInputVector_t (tuples of subsets of distances).
  • FunctionApproximation now has list_of_arguments_t as parameter to evaluate() and evaluate_derivative().
  • DOCU: docu change in TrainingData.
  • Property mode set to 100644
File size: 4.8 KB
Line 
1/*
2 * Project: MoleCuilder
3 * Description: creates and alters molecular systems
4 * Copyright (C) 2012 University of Bonn. All rights reserved.
5 * Copyright (C) 2013 Frederik Heber. All rights reserved.
6 *
7 *
8 * This file is part of MoleCuilder.
9 *
10 * MoleCuilder is free software: you can redistribute it and/or modify
11 * it under the terms of the GNU General Public License as published by
12 * the Free Software Foundation, either version 2 of the License, or
13 * (at your option) any later version.
14 *
15 * MoleCuilder is distributed in the hope that it will be useful,
16 * but WITHOUT ANY WARRANTY; without even the implied warranty of
17 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
18 * GNU General Public License for more details.
19 *
20 * You should have received a copy of the GNU General Public License
21 * along with MoleCuilder. If not, see <http://www.gnu.org/licenses/>.
22 */
23
24/*
25 * ThreeBodyPotential_AngleUnitTest.cpp
26 *
27 * Created on: Oct 16, 2012
28 * Author: heber
29 */
30
31// include config.h
32#ifdef HAVE_CONFIG_H
33#include <config.h>
34#endif
35
36using namespace std;
37
38#include <cppunit/CompilerOutputter.h>
39#include <cppunit/extensions/TestFactoryRegistry.h>
40#include <cppunit/ui/text/TestRunner.h>
41
42#include "ThreeBodyPotential_AngleUnitTest.hpp"
43
44#include <boost/assign.hpp>
45
46#include "CodePatterns/Assert.hpp"
47
48#include "FunctionApproximation/FunctionArgument.hpp"
49#include "Potentials/Specifics/ThreeBodyPotential_Angle.hpp"
50#include "Potentials/helpers.hpp"
51
52using namespace boost::assign;
53
54#ifdef HAVE_TESTRUNNER
55#include "UnitTestMain.hpp"
56#endif /*HAVE_TESTRUNNER*/
57
58/********************************************** Test classes **************************************/
59
60// Registers the fixture into the 'registry'
61CPPUNIT_TEST_SUITE_REGISTRATION( ThreeBodyPotential_AngleTest );
62
63const double spring_constant = .5;
64
65void ThreeBodyPotential_AngleTest::setUp()
66{
67 // failing asserts should be thrown
68 ASSERT_DO(Assert::Throw);
69
70 // create three distances to have the desired angle
71 typedef std::vector<double> angles_t;
72 angles_t angles;
73 angles += -0.5, -.4, -.3, -.2, -.1, 0., .1, .2, .3, .4, .5;
74 FunctionModel::arguments_t tempvector(3);
75 tempvector[0] = argument_t( std::make_pair(0,1), std::make_pair(0,1), 1.);
76 tempvector[1] = argument_t( std::make_pair(1,2), std::make_pair(1,1), 0.);
77 tempvector[2] = argument_t( std::make_pair(0,2), std::make_pair(0,1), 1.);
78 for (angles_t::const_iterator iter = angles.begin(); iter != angles.end(); ++iter) {
79 tempvector[1].distance = sqrt(-(2.*(*iter)-2.));//1.+1.-x/(2.*1.*1.)
80 input += tempvector;
81 }
82 output +=
83 spring_constant*0.25,
84 spring_constant*0.16,
85 spring_constant*0.09,
86 spring_constant*0.04,
87 spring_constant*0.01,
88 spring_constant*0.,
89 spring_constant*0.01,
90 spring_constant*0.04,
91 spring_constant*0.09,
92 spring_constant*0.16,
93 spring_constant*0.25;
94
95 CPPUNIT_ASSERT_EQUAL( input.size(), output.size() );
96}
97
98
99void ThreeBodyPotential_AngleTest::tearDown()
100{
101}
102
103/** UnitTest for operator()
104 */
105void ThreeBodyPotential_AngleTest::operatorTest()
106{
107 ThreeBodyPotential_Angle::ParticleTypes_t types =
108 boost::assign::list_of<ThreeBodyPotential_Angle::ParticleType_t>
109 (0)(1)(1)
110 ;
111 ThreeBodyPotential_Angle angle(types, spring_constant,0.);
112 for (size_t index = 0; index < input.size(); ++index) {
113 const ThreeBodyPotential_Angle::results_t result =
114 angle( FunctionModel::list_of_arguments_t(1, input[index]) );
115 CPPUNIT_ASSERT(
116 Helpers::isEqual(
117 output[index],
118 result[0]
119 )
120 );
121 }
122}
123
124/** UnitTest for derivative()
125 */
126void ThreeBodyPotential_AngleTest::derivativeTest()
127{
128 ThreeBodyPotential_Angle::ParticleTypes_t types =
129 boost::assign::list_of<ThreeBodyPotential_Angle::ParticleType_t>
130 (0)(1)(1)
131 ;
132 ThreeBodyPotential_Angle angle(types, spring_constant,0.);
133 CPPUNIT_ASSERT(
134 Helpers::isEqual(
135 0.,
136 angle.derivative(
137 FunctionModel::list_of_arguments_t(1, input[5])
138 )[0],
139 10.
140 )
141 );
142}
143
144
145/** UnitTest for parameter_derivative()
146 */
147void ThreeBodyPotential_AngleTest::parameter_derivativeTest()
148{
149 ThreeBodyPotential_Angle::ParticleTypes_t types =
150 boost::assign::list_of<ThreeBodyPotential_Angle::ParticleType_t>
151 (0)(1)(1)
152 ;
153 ThreeBodyPotential_Angle angle(types, spring_constant,0.);
154 CPPUNIT_ASSERT(
155 Helpers::isEqual(
156 0.,
157 angle.parameter_derivative(
158 FunctionModel::list_of_arguments_t(1, input[5]),
159 0
160 )[0],
161 10.
162 )
163 );
164 CPPUNIT_ASSERT(
165 Helpers::isEqual(
166 0.,
167 angle.parameter_derivative(
168 FunctionModel::list_of_arguments_t(1, input[5]),
169 1
170 )[0],
171 10.
172 )
173 );
174}
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