source: src/Potentials/Specifics/unittests/PairPotential_HarmonicUnitTest.cpp@ 35d171

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Last change on this file since 35d171 was e1fe7e, checked in by Frederik Heber <heber@…>, 11 years ago

FunctionModel now uses list_of_arguments to split sequence of subsets of distances.

  • this fixes ambiguities with the set of distances: Imagine the distances within a water molecule as OH (A) and HH (B). We then may have a sequence of argument_t as AABAAB. And with the current implementation of CompoundPotential::splitUpArgumentsByModels() we would always choose the latter (and more complex) model. Hence, we make two calls to TriplePotential_Angle, instead of calls twice to PairPotential_Harmonic for A, one to PairPotential_Harmonic for B, and once to TriplePotential_Angle for AAB.
  • now, we new list looks like A,A,B,AAB where each tuple of distances can be uniquely associated with a specific potential.
  • changed signatures of EmpiricalPotential::operator(), ::derivative(), ::parameter_derivative(). This involved changing all of the current specific potentials and CompoundPotential.
  • TrainingData must discern between the InputVector_t (just all distances) and the FilteredInputVector_t (tuples of subsets of distances).
  • FunctionApproximation now has list_of_arguments_t as parameter to evaluate() and evaluate_derivative().
  • DOCU: docu change in TrainingData.
  • Property mode set to 100644
File size: 4.2 KB
Line 
1/*
2 * Project: MoleCuilder
3 * Description: creates and alters molecular systems
4 * Copyright (C) 2012 University of Bonn. All rights reserved.
5 * Copyright (C) 2013 Frederik Heber. All rights reserved.
6 *
7 *
8 * This file is part of MoleCuilder.
9 *
10 * MoleCuilder is free software: you can redistribute it and/or modify
11 * it under the terms of the GNU General Public License as published by
12 * the Free Software Foundation, either version 2 of the License, or
13 * (at your option) any later version.
14 *
15 * MoleCuilder is distributed in the hope that it will be useful,
16 * but WITHOUT ANY WARRANTY; without even the implied warranty of
17 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
18 * GNU General Public License for more details.
19 *
20 * You should have received a copy of the GNU General Public License
21 * along with MoleCuilder. If not, see <http://www.gnu.org/licenses/>.
22 */
23
24/*
25 * PairPotential_HarmonicUnitTest.cpp
26 *
27 * Created on: Oct 04, 2012
28 * Author: heber
29 */
30
31// include config.h
32#ifdef HAVE_CONFIG_H
33#include <config.h>
34#endif
35
36using namespace std;
37
38#include <cppunit/CompilerOutputter.h>
39#include <cppunit/extensions/TestFactoryRegistry.h>
40#include <cppunit/ui/text/TestRunner.h>
41
42#include "PairPotential_HarmonicUnitTest.hpp"
43
44#include <boost/assign.hpp>
45
46#include "CodePatterns/Assert.hpp"
47
48#include "FunctionApproximation/FunctionArgument.hpp"
49#include "Potentials/Specifics/PairPotential_Harmonic.hpp"
50#include "Potentials/helpers.hpp"
51
52using namespace boost::assign;
53
54#ifdef HAVE_TESTRUNNER
55#include "UnitTestMain.hpp"
56#endif /*HAVE_TESTRUNNER*/
57
58/********************************************** Test classes **************************************/
59
60// Registers the fixture into the 'registry'
61CPPUNIT_TEST_SUITE_REGISTRATION( PairPotential_HarmonicTest );
62
63
64void PairPotential_HarmonicTest::setUp()
65{
66 // failing asserts should be thrown
67 ASSERT_DO(Assert::Throw);
68
69 input += 0., 1., 2., 3., 4., 5., 6., 7., 8., 9.;
70 output +=
71 .5*1.,
72 .5*0.,
73 .5*1.,
74 .5*4.,
75 .5*9.,
76 .5*16.,
77 .5*25.,
78 .5*36.,
79 .5*49.,
80 .5*64.;
81
82 CPPUNIT_ASSERT_EQUAL( input.size(), output.size() );
83}
84
85
86void PairPotential_HarmonicTest::tearDown()
87{
88}
89
90/** UnitTest for operator()
91 */
92void PairPotential_HarmonicTest::operatorTest()
93{
94 PairPotential_Harmonic::ParticleTypes_t types =
95 boost::assign::list_of<PairPotential_Harmonic::ParticleType_t>
96 (0)(1)
97 ;
98 PairPotential_Harmonic harmonic(types, .5,1.);
99 for (size_t index = 0; index < input.size(); ++index) {
100 argument_t arg(argument_t::indices_t(0,1), argument_t::types_t(0,1), input[index]);
101 CPPUNIT_ASSERT(
102 Helpers::isEqual(
103 output[index],
104 harmonic( FunctionModel::list_of_arguments_t(1, FunctionModel::arguments_t(1,arg)) )[0]
105 )
106 );
107 }
108}
109
110/** UnitTest for derivative()
111 */
112void PairPotential_HarmonicTest::derivativeTest()
113{
114 PairPotential_Harmonic::ParticleTypes_t types =
115 boost::assign::list_of<PairPotential_Harmonic::ParticleType_t>
116 (0)(1)
117 ;
118 PairPotential_Harmonic harmonic(types, .5,1.);
119 argument_t arg(argument_t::indices_t(0,1), argument_t::types_t(0,1), 1.);
120 CPPUNIT_ASSERT(
121 Helpers::isEqual(
122 0.,
123 harmonic.derivative(
124 FunctionModel::list_of_arguments_t(1, FunctionModel::arguments_t(1,arg))
125 )[0]
126 )
127 );
128}
129
130
131/** UnitTest for parameter_derivative()
132 */
133void PairPotential_HarmonicTest::parameter_derivativeTest()
134{
135 PairPotential_Harmonic::ParticleTypes_t types =
136 boost::assign::list_of<PairPotential_Harmonic::ParticleType_t>
137 (0)(1)
138 ;
139 PairPotential_Harmonic harmonic(types, .5,1.);
140 argument_t arg(argument_t::indices_t(0,1), argument_t::types_t(0,1), 1.);
141 CPPUNIT_ASSERT(
142 Helpers::isEqual(
143 0.,
144 harmonic.parameter_derivative(
145 FunctionModel::list_of_arguments_t(1, FunctionModel::arguments_t(1,arg)),
146 0
147 )[0]
148 )
149 );
150 CPPUNIT_ASSERT(
151 Helpers::isEqual(
152 0.,
153 harmonic.parameter_derivative(
154 FunctionModel::list_of_arguments_t(1, FunctionModel::arguments_t(1,arg)),
155 1
156 )[0]
157 )
158 );
159}
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