source: src/Potentials/Specifics/unittests/FourBodyPotential_TorsionUnitTest.cpp@ 35d171

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Last change on this file since 35d171 was e1fe7e, checked in by Frederik Heber <heber@…>, 11 years ago

FunctionModel now uses list_of_arguments to split sequence of subsets of distances.

  • this fixes ambiguities with the set of distances: Imagine the distances within a water molecule as OH (A) and HH (B). We then may have a sequence of argument_t as AABAAB. And with the current implementation of CompoundPotential::splitUpArgumentsByModels() we would always choose the latter (and more complex) model. Hence, we make two calls to TriplePotential_Angle, instead of calls twice to PairPotential_Harmonic for A, one to PairPotential_Harmonic for B, and once to TriplePotential_Angle for AAB.
  • now, we new list looks like A,A,B,AAB where each tuple of distances can be uniquely associated with a specific potential.
  • changed signatures of EmpiricalPotential::operator(), ::derivative(), ::parameter_derivative(). This involved changing all of the current specific potentials and CompoundPotential.
  • TrainingData must discern between the InputVector_t (just all distances) and the FilteredInputVector_t (tuples of subsets of distances).
  • FunctionApproximation now has list_of_arguments_t as parameter to evaluate() and evaluate_derivative().
  • DOCU: docu change in TrainingData.
  • Property mode set to 100644
File size: 5.3 KB
Line 
1/*
2 * Project: MoleCuilder
3 * Description: creates and alters molecular systems
4 * Copyright (C) 2013 Frederik Heber. All rights reserved.
5 *
6 *
7 * This file is part of MoleCuilder.
8 *
9 * MoleCuilder is free software: you can redistribute it and/or modify
10 * it under the terms of the GNU General Public License as published by
11 * the Free Software Foundation, either version 2 of the License, or
12 * (at your option) any later version.
13 *
14 * MoleCuilder is distributed in the hope that it will be useful,
15 * but WITHOUT ANY WARRANTY; without even the implied warranty of
16 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
17 * GNU General Public License for more details.
18 *
19 * You should have received a copy of the GNU General Public License
20 * along with MoleCuilder. If not, see <http://www.gnu.org/licenses/>.
21 */
22
23/*
24 * FourBodyPotential_TorsionUnitTest.cpp
25 *
26 * Created on: Jul 08, 2013
27 * Author: heber
28 */
29
30// include config.h
31#ifdef HAVE_CONFIG_H
32#include <config.h>
33#endif
34
35using namespace std;
36
37#include <cppunit/CompilerOutputter.h>
38#include <cppunit/extensions/TestFactoryRegistry.h>
39#include <cppunit/ui/text/TestRunner.h>
40
41#include "FourBodyPotential_TorsionUnitTest.hpp"
42
43#include <boost/assign.hpp>
44
45#include "CodePatterns/Assert.hpp"
46
47#include "FunctionApproximation/FunctionArgument.hpp"
48#include "Potentials/Specifics/FourBodyPotential_Torsion.hpp"
49#include "Potentials/helpers.hpp"
50
51using namespace boost::assign;
52
53#ifdef HAVE_TESTRUNNER
54#include "UnitTestMain.hpp"
55#endif /*HAVE_TESTRUNNER*/
56
57/********************************************** Test classes **************************************/
58
59// Registers the fixture into the 'registry'
60CPPUNIT_TEST_SUITE_REGISTRATION( FourBodyPotential_TorsionTest );
61
62const double spring_constant = .5;
63
64void FourBodyPotential_TorsionTest::setUp()
65{
66 // failing asserts should be thrown
67 ASSERT_DO(Assert::Throw);
68
69 // create three distances to have the desired angle
70 typedef std::vector<double> angles_t;
71 angles_t angles;
72 angles += -0.5, -.4, -.3, -.2, -.1, 0., .1, .2, .3, .4, .5;
73 FunctionModel::arguments_t tempvector(6);
74 tempvector[0] = argument_t( std::make_pair(0,1), std::make_pair(0,1), 1.);
75 tempvector[1] = argument_t( std::make_pair(0,2), std::make_pair(0,1), 1.);
76 tempvector[2] = argument_t( std::make_pair(0,3), std::make_pair(0,0), 0.);
77 tempvector[3] = argument_t( std::make_pair(1,2), std::make_pair(1,1), 1.);
78 tempvector[4] = argument_t( std::make_pair(1,3), std::make_pair(0,1), 1.);
79 tempvector[5] = argument_t( std::make_pair(2,3), std::make_pair(0,1), 1.);
80 // we have two equilateral triangles (length 1)
81 // height is then \sqrt(2*(1+1)-1)*.5=sqrt(3)*.5
82 // then angle in triangle of both heights and connecting line is
83 // (h_1^2+h_2^2 - x^2) / (2*h_1*h_2) = cos(theta). Solving this equation
84 // for the unknown distance x is what we need
85 // 3/4+3/4-x/(2*sqrt(3)*.5*sqrt(3)*.5)
86 // x = sqrt(h_1^2+h_2^2 - cos(theta) * (2*h_1*h_2))
87 for (angles_t::const_iterator iter = angles.begin(); iter != angles.end(); ++iter) {
88 tempvector[2].distance = sqrt(.75+.75 - (*iter)*(1.5));
89 input += tempvector;
90 }
91 output +=
92 spring_constant*0.25,
93 spring_constant*0.16,
94 spring_constant*0.09,
95 spring_constant*0.04,
96 spring_constant*0.01,
97 spring_constant*0.,
98 spring_constant*0.01,
99 spring_constant*0.04,
100 spring_constant*0.09,
101 spring_constant*0.16,
102 spring_constant*0.25;
103
104 CPPUNIT_ASSERT_EQUAL( input.size(), output.size() );
105}
106
107
108void FourBodyPotential_TorsionTest::tearDown()
109{
110}
111
112/** UnitTest for operator()
113 */
114void FourBodyPotential_TorsionTest::operatorTest()
115{
116 FourBodyPotential_Torsion::ParticleTypes_t types =
117 boost::assign::list_of<FourBodyPotential_Torsion::ParticleType_t>
118 (0)(1)(1)(0)
119 ;
120 FourBodyPotential_Torsion angle(types, spring_constant,0.);
121 for (size_t index = 0; index < input.size(); ++index) {
122 const FourBodyPotential_Torsion::results_t result =
123 angle( FunctionModel::list_of_arguments_t(1, input[index]) );
124 CPPUNIT_ASSERT(
125 Helpers::isEqual(
126 output[index],
127 result[0]
128 )
129 );
130 }
131}
132
133/** UnitTest for derivative()
134 */
135void FourBodyPotential_TorsionTest::derivativeTest()
136{
137 FourBodyPotential_Torsion::ParticleTypes_t types =
138 boost::assign::list_of<FourBodyPotential_Torsion::ParticleType_t>
139 (0)(1)(1)(0)
140 ;
141 FourBodyPotential_Torsion angle(types, spring_constant,0.);
142 CPPUNIT_ASSERT(
143 Helpers::isEqual(
144 0.,
145 angle.derivative(
146 FunctionModel::list_of_arguments_t(1, input[5])
147 )[0],
148 10.
149 )
150 );
151}
152
153
154/** UnitTest for parameter_derivative()
155 */
156void FourBodyPotential_TorsionTest::parameter_derivativeTest()
157{
158 FourBodyPotential_Torsion::ParticleTypes_t types =
159 boost::assign::list_of<FourBodyPotential_Torsion::ParticleType_t>
160 (0)(1)(1)(0)
161 ;
162 FourBodyPotential_Torsion angle(types, spring_constant,0.);
163 CPPUNIT_ASSERT(
164 Helpers::isEqual(
165 0.,
166 angle.parameter_derivative(
167 FunctionModel::list_of_arguments_t(1, input[5]),
168 0
169 )[0],
170 10.
171 )
172 );
173 CPPUNIT_ASSERT(
174 Helpers::isEqual(
175 0.,
176 angle.parameter_derivative(
177 FunctionModel::list_of_arguments_t(1, input[5]),
178 1
179 )[0],
180 10.
181 )
182 );
183}
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