| 1 | /*
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| 2 | * ConstantPotential.hpp
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| 3 | *
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| 4 | * Created on: May 09, 2013
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| 5 | * Author: heber
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| 6 | */
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| 7 |
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| 8 | #ifndef CONSTANTPOTENTIAL_HPP_
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| 9 | #define CONSTANTPOTENTIAL_HPP_
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| 10 |
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| 11 |
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| 12 | // include config.h
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| 13 | #ifdef HAVE_CONFIG_H
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| 14 | #include <config.h>
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| 15 | #endif
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| 16 |
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| 17 | #include <limits>
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| 18 |
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| 19 | #include "Potentials/EmpiricalPotential.hpp"
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| 20 |
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| 21 | class PotentialFactory;
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| 22 | class TrainingData;
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| 23 |
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| 24 | /** This is the implementation of a constant potential to adapt to any offset
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| 25 | * in the potential energy.
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| 26 | *
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| 27 | * This evaluates \f$ k \f$.
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| 28 | *
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| 29 | */
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| 30 | class ConstantPotential :
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| 31 | public EmpiricalPotential
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| 32 | {
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| 33 | //!> grant unit test access to internal parts
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| 34 | friend class ConstantPotentialTest;
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| 35 | //!> grant PotentialFactory access to default cstor
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| 36 | friend class PotentialFactory;
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| 37 | // some repeated typedefs to avoid ambiguities
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| 38 | typedef FunctionModel::arguments_t arguments_t;
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| 39 | typedef FunctionModel::result_t result_t;
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| 40 | typedef FunctionModel::results_t results_t;
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| 41 | typedef EmpiricalPotential::derivative_components_t derivative_components_t;
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| 42 | typedef FunctionModel::parameters_t parameters_t;
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| 43 | private:
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| 44 | /** Private default constructor.
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| 45 | *
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| 46 | * This prevents creation of potential without set ParticleTypes_t.
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| 47 | *
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| 48 | * \note PotentialFactory may use this default cstor
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| 49 | *
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| 50 | */
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| 51 | ConstantPotential();
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| 52 |
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| 53 | public:
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| 54 | ConstantPotential(const ParticleTypes_t &_ParticleTypes);
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| 55 | ConstantPotential(
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| 56 | const ParticleTypes_t &_ParticleTypes,
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| 57 | const double _energy_offset);
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| 58 | virtual ~ConstantPotential() {}
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| 59 |
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| 60 | /** Setter for parameters as required by FunctionModel interface.
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| 61 | *
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| 62 | * \param _params given set of parameters
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| 63 | */
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| 64 | void setParameters(const parameters_t &_params);
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| 65 |
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| 66 | /** Getter for parameters as required by FunctionModel interface.
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| 67 | *
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| 68 | * \return set of parameters
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| 69 | */
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| 70 | parameters_t getParameters() const
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| 71 | {
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| 72 | return params;
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| 73 | }
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| 74 |
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| 75 | /** Sets the parameter randomly within the sensible range of each parameter.
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| 76 | *
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| 77 | * \param data container with training data for guesstimating range
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| 78 | */
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| 79 | void setParametersToRandomInitialValues(const TrainingData &data);
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| 80 |
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| 81 | /** Getter for the number of parameters of this model function.
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| 82 | *
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| 83 | * \return number of parameters
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| 84 | */
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| 85 | size_t getParameterDimension() const
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| 86 | {
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| 87 | return 1;
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| 88 | }
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| 89 |
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| 90 | /** Evaluates the harmonic potential function for the given arguments.
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| 91 | *
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| 92 | * @param arguments single distance
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| 93 | * @return value of the potential function
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| 94 | */
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| 95 | results_t operator()(const arguments_t &arguments) const;
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| 96 |
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| 97 | /** Evaluates the derivative of the potential function.
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| 98 | *
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| 99 | * @param arguments single distance
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| 100 | * @return vector with derivative with respect to the input degrees of freedom
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| 101 | */
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| 102 | derivative_components_t derivative(const arguments_t &arguments) const;
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| 103 |
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| 104 | /** Evaluates the derivative of the function with the given \a arguments
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| 105 | * with respect to a specific parameter indicated by \a index.
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| 106 | *
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| 107 | * \param arguments set of arguments as input variables to the function
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| 108 | * \param index derivative of which parameter
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| 109 | * \return result vector containing the derivative with respect to the given
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| 110 | * input
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| 111 | */
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| 112 | results_t parameter_derivative(const arguments_t &arguments, const size_t index) const;
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| 113 |
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| 114 | /** Returns the functor that converts argument_s into the
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| 115 | * internal coordinate described by this potential function.
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| 116 | *
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| 117 | * \return coordinator functor
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| 118 | */
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| 119 | Coordinator::ptr getCoordinator() const
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| 120 | { return coordinator; }
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| 121 |
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| 122 | /** Return the token name of this specific potential.
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| 123 | *
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| 124 | * \return token name of the potential
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| 125 | */
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| 126 | const std::string& getToken() const
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| 127 | { return potential_token; }
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| 128 |
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| 129 | /** Returns a vector of parameter names.
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| 130 | *
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| 131 | * This is required from the specific implementation
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| 132 | *
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| 133 | * \return vector of strings containing parameter names
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| 134 | */
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| 135 | const ParameterNames_t& getParameterNames() const
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| 136 | { return ParameterNames; }
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| 137 |
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| 138 | /** States whether lower and upper boundaries should be used to constraint
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| 139 | * the parameter search for this function model.
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| 140 | *
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| 141 | * \return true - constraints should be used, false - else
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| 142 | */
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| 143 | bool isBoxConstraint() const {
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| 144 | return true;
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| 145 | }
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| 146 |
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| 147 | /** Returns a vector which are the lower boundaries for each parameter_t
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| 148 | * of this FunctionModel.
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| 149 | *
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| 150 | * \return vector of parameter_t resembling lowest allowed values
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| 151 | */
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| 152 | parameters_t getLowerBoxConstraints() const {
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| 153 | parameters_t lowerbound(getParameterDimension(), -std::numeric_limits<double>::max());
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| 154 | return lowerbound;
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| 155 | }
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| 156 |
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| 157 | /** Returns a vector which are the upper boundaries for each parameter_t
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| 158 | * of this FunctionModel.
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| 159 | *
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| 160 | * \return vector of parameter_t resembling highest allowed values
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| 161 | */
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| 162 | parameters_t getUpperBoxConstraints() const {
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| 163 | return parameters_t(getParameterDimension(), std::numeric_limits<double>::max());
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| 164 | }
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| 165 |
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| 166 | /** Returns a bound function to be used with TrainingData, extracting distances
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| 167 | * from a Fragment.
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| 168 | *
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| 169 | * \return bound function extracting distances from a fragment
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| 170 | */
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| 171 | FunctionModel::extractor_t getSpecificExtractor() const;
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| 172 |
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| 173 | /** Returns a bound function to be used with TrainingData, extracting distances
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| 174 | * from a Fragment.
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| 175 | *
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| 176 | * \return bound function extracting distances from a fragment
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| 177 | */
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| 178 | FunctionModel::filter_t getSpecificFilter() const;
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| 179 |
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| 180 | /** Returns the number of arguments the underlying function requires.
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| 181 | *
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| 182 | * \return number of arguments of the function
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| 183 | */
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| 184 | size_t getSpecificArgumentCount() const
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| 185 | { return 0; }
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| 186 |
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| 187 | enum parameter_enum_t {
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| 188 | energy_offset=0,
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| 189 | MAXPARAMS
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| 190 | };
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| 191 |
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| 192 | private:
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| 193 | //!> parameter vector with parameters as in enum parameter_enum_t
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| 194 | parameters_t params;
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| 195 |
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| 196 | //!> static definitions of the parameter name for this potential
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| 197 | static const ParameterNames_t ParameterNames;
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| 198 |
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| 199 | //!> static token of this potential type
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| 200 | static const std::string potential_token;
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| 201 |
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| 202 | //!> internal coordinator object for converting arguments_t
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| 203 | static Coordinator::ptr coordinator;
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| 204 | };
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| 205 |
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| 206 | #endif /* CONSTANTPOTENTIAL_HPP_ */
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