source: src/Potentials/Specifics/ConstantPotential.hpp@ 64cafb2

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Last change on this file since 64cafb2 was e1fe7e, checked in by Frederik Heber <heber@…>, 11 years ago

FunctionModel now uses list_of_arguments to split sequence of subsets of distances.

  • this fixes ambiguities with the set of distances: Imagine the distances within a water molecule as OH (A) and HH (B). We then may have a sequence of argument_t as AABAAB. And with the current implementation of CompoundPotential::splitUpArgumentsByModels() we would always choose the latter (and more complex) model. Hence, we make two calls to TriplePotential_Angle, instead of calls twice to PairPotential_Harmonic for A, one to PairPotential_Harmonic for B, and once to TriplePotential_Angle for AAB.
  • now, we new list looks like A,A,B,AAB where each tuple of distances can be uniquely associated with a specific potential.
  • changed signatures of EmpiricalPotential::operator(), ::derivative(), ::parameter_derivative(). This involved changing all of the current specific potentials and CompoundPotential.
  • TrainingData must discern between the InputVector_t (just all distances) and the FilteredInputVector_t (tuples of subsets of distances).
  • FunctionApproximation now has list_of_arguments_t as parameter to evaluate() and evaluate_derivative().
  • DOCU: docu change in TrainingData.
  • Property mode set to 100644
File size: 5.6 KB
Line 
1/*
2 * ConstantPotential.hpp
3 *
4 * Created on: May 09, 2013
5 * Author: heber
6 */
7
8#ifndef CONSTANTPOTENTIAL_HPP_
9#define CONSTANTPOTENTIAL_HPP_
10
11
12// include config.h
13#ifdef HAVE_CONFIG_H
14#include <config.h>
15#endif
16
17#include <limits>
18
19#include "Potentials/EmpiricalPotential.hpp"
20
21class PotentialFactory;
22class TrainingData;
23
24/** This is the implementation of a constant potential to adapt to any offset
25 * in the potential energy.
26 *
27 * This evaluates \f$ k \f$.
28 *
29 */
30class ConstantPotential :
31 public EmpiricalPotential
32{
33 //!> grant unit test access to internal parts
34 friend class ConstantPotentialTest;
35 //!> grant PotentialFactory access to default cstor
36 friend class PotentialFactory;
37 // some repeated typedefs to avoid ambiguities
38 typedef FunctionModel::list_of_arguments_t list_of_arguments_t;
39 typedef FunctionModel::arguments_t arguments_t;
40 typedef FunctionModel::result_t result_t;
41 typedef FunctionModel::results_t results_t;
42 typedef EmpiricalPotential::derivative_components_t derivative_components_t;
43 typedef FunctionModel::parameters_t parameters_t;
44private:
45 /** Private default constructor.
46 *
47 * This prevents creation of potential without set ParticleTypes_t.
48 *
49 * \note PotentialFactory may use this default cstor
50 *
51 */
52 ConstantPotential();
53
54public:
55 ConstantPotential(const ParticleTypes_t &_ParticleTypes);
56 ConstantPotential(
57 const ParticleTypes_t &_ParticleTypes,
58 const double _energy_offset);
59 virtual ~ConstantPotential() {}
60
61 /** Setter for parameters as required by FunctionModel interface.
62 *
63 * \param _params given set of parameters
64 */
65 void setParameters(const parameters_t &_params);
66
67 /** Getter for parameters as required by FunctionModel interface.
68 *
69 * \return set of parameters
70 */
71 parameters_t getParameters() const
72 {
73 return params;
74 }
75
76 /** Sets the parameter randomly within the sensible range of each parameter.
77 *
78 * \param data container with training data for guesstimating range
79 */
80 void setParametersToRandomInitialValues(const TrainingData &data);
81
82 /** Getter for the number of parameters of this model function.
83 *
84 * \return number of parameters
85 */
86 size_t getParameterDimension() const
87 {
88 return 1;
89 }
90
91 /** Evaluates the harmonic potential function for the given arguments.
92 *
93 * @param listarguments empty list
94 * @return value of the potential function
95 */
96 results_t operator()(const list_of_arguments_t &listarguments) const;
97
98 /** Evaluates the derivative of the potential function.
99 *
100 * @param listarguments empty list
101 * @return vector with derivative with respect to the input degrees of freedom
102 */
103 derivative_components_t derivative(const list_of_arguments_t &listarguments) const;
104
105 /** Evaluates the derivative of the function with the given \a arguments
106 * with respect to a specific parameter indicated by \a index.
107 *
108 * \param listarguments empty list
109 * \param index derivative of which parameter
110 * \return result vector containing the derivative with respect to the given
111 * input
112 */
113 results_t parameter_derivative(const list_of_arguments_t &listarguments, const size_t index) const;
114
115 /** Returns the functor that converts argument_s into the
116 * internal coordinate described by this potential function.
117 *
118 * \return coordinator functor
119 */
120 Coordinator::ptr getCoordinator() const
121 { return coordinator; }
122
123 /** Return the token name of this specific potential.
124 *
125 * \return token name of the potential
126 */
127 const std::string& getToken() const
128 { return potential_token; }
129
130 /** Returns a vector of parameter names.
131 *
132 * This is required from the specific implementation
133 *
134 * \return vector of strings containing parameter names
135 */
136 const ParameterNames_t& getParameterNames() const
137 { return ParameterNames; }
138
139 /** States whether lower and upper boundaries should be used to constraint
140 * the parameter search for this function model.
141 *
142 * \return true - constraints should be used, false - else
143 */
144 bool isBoxConstraint() const {
145 return true;
146 }
147
148 /** Returns a vector which are the lower boundaries for each parameter_t
149 * of this FunctionModel.
150 *
151 * \return vector of parameter_t resembling lowest allowed values
152 */
153 parameters_t getLowerBoxConstraints() const {
154 parameters_t lowerbound(getParameterDimension(), -std::numeric_limits<double>::max());
155 return lowerbound;
156 }
157
158 /** Returns a vector which are the upper boundaries for each parameter_t
159 * of this FunctionModel.
160 *
161 * \return vector of parameter_t resembling highest allowed values
162 */
163 parameters_t getUpperBoxConstraints() const {
164 return parameters_t(getParameterDimension(), std::numeric_limits<double>::max());
165 }
166
167 /** Returns a bound function to be used with TrainingData, extracting distances
168 * from a Fragment.
169 *
170 * \return bound function extracting distances from a fragment
171 */
172 FunctionModel::filter_t getSpecificFilter() const;
173
174 /** Returns the number of arguments the underlying function requires.
175 *
176 * \return number of arguments of the function
177 */
178 size_t getSpecificArgumentCount() const
179 { return 0; }
180
181 enum parameter_enum_t {
182 energy_offset=0,
183 MAXPARAMS
184 };
185
186private:
187 //!> parameter vector with parameters as in enum parameter_enum_t
188 parameters_t params;
189
190 //!> static definitions of the parameter name for this potential
191 static const ParameterNames_t ParameterNames;
192
193 //!> static token of this potential type
194 static const std::string potential_token;
195
196 //!> internal coordinator object for converting arguments_t
197 static Coordinator::ptr coordinator;
198};
199
200#endif /* CONSTANTPOTENTIAL_HPP_ */
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