1 | /*
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2 | * ConstantPotential.hpp
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3 | *
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4 | * Created on: May 09, 2013
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5 | * Author: heber
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6 | */
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7 |
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8 | #ifndef CONSTANTPOTENTIAL_HPP_
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9 | #define CONSTANTPOTENTIAL_HPP_
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10 |
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11 |
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12 | // include config.h
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13 | #ifdef HAVE_CONFIG_H
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14 | #include <config.h>
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15 | #endif
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16 |
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17 | #include <limits>
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18 |
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19 | #include "Potentials/EmpiricalPotential.hpp"
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20 |
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21 | class PotentialFactory;
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22 | class TrainingData;
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23 |
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24 | /** This is the implementation of a constant potential to adapt to any offset
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25 | * in the potential energy.
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26 | *
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27 | * This evaluates \f$ k \f$.
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28 | *
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29 | */
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30 | class ConstantPotential :
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31 | public EmpiricalPotential
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32 | {
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33 | //!> grant unit test access to internal parts
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34 | friend class ConstantPotentialTest;
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35 | //!> grant PotentialFactory access to default cstor
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36 | friend class PotentialFactory;
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37 | // some repeated typedefs to avoid ambiguities
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38 | typedef FunctionModel::list_of_arguments_t list_of_arguments_t;
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39 | typedef FunctionModel::arguments_t arguments_t;
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40 | typedef FunctionModel::result_t result_t;
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41 | typedef FunctionModel::results_t results_t;
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42 | typedef EmpiricalPotential::derivative_components_t derivative_components_t;
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43 | typedef FunctionModel::parameters_t parameters_t;
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44 | private:
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45 | /** Private default constructor.
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46 | *
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47 | * This prevents creation of potential without set ParticleTypes_t.
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48 | *
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49 | * \note PotentialFactory may use this default cstor
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50 | *
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51 | */
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52 | ConstantPotential();
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53 |
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54 | public:
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55 | ConstantPotential(const ParticleTypes_t &_ParticleTypes);
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56 | ConstantPotential(
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57 | const ParticleTypes_t &_ParticleTypes,
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58 | const double _energy_offset);
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59 | virtual ~ConstantPotential() {}
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60 |
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61 | /** Setter for parameters as required by FunctionModel interface.
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62 | *
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63 | * \param _params given set of parameters
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64 | */
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65 | void setParameters(const parameters_t &_params);
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66 |
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67 | /** Getter for parameters as required by FunctionModel interface.
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68 | *
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69 | * \return set of parameters
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70 | */
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71 | parameters_t getParameters() const
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72 | {
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73 | return params;
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74 | }
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75 |
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76 | /** Sets the parameter randomly within the sensible range of each parameter.
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77 | *
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78 | * \param data container with training data for guesstimating range
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79 | */
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80 | void setParametersToRandomInitialValues(const TrainingData &data);
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81 |
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82 | /** Getter for the number of parameters of this model function.
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83 | *
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84 | * \return number of parameters
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85 | */
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86 | size_t getParameterDimension() const
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87 | {
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88 | return 1;
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89 | }
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90 |
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91 | /** Evaluates the harmonic potential function for the given arguments.
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92 | *
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93 | * @param listarguments empty list
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94 | * @return value of the potential function
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95 | */
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96 | results_t operator()(const list_of_arguments_t &listarguments) const;
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97 |
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98 | /** Evaluates the derivative of the potential function.
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99 | *
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100 | * @param listarguments empty list
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101 | * @return vector with derivative with respect to the input degrees of freedom
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102 | */
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103 | derivative_components_t derivative(const list_of_arguments_t &listarguments) const;
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104 |
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105 | /** Evaluates the derivative of the function with the given \a arguments
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106 | * with respect to a specific parameter indicated by \a index.
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107 | *
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108 | * \param listarguments empty list
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109 | * \param index derivative of which parameter
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110 | * \return result vector containing the derivative with respect to the given
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111 | * input
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112 | */
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113 | results_t parameter_derivative(const list_of_arguments_t &listarguments, const size_t index) const;
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114 |
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115 | /** Returns the functor that converts argument_s into the
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116 | * internal coordinate described by this potential function.
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117 | *
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118 | * \return coordinator functor
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119 | */
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120 | Coordinator::ptr getCoordinator() const
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121 | { return coordinator; }
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122 |
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123 | /** Return the token name of this specific potential.
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124 | *
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125 | * \return token name of the potential
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126 | */
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127 | const std::string& getToken() const
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128 | { return potential_token; }
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129 |
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130 | /** Returns a vector of parameter names.
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131 | *
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132 | * This is required from the specific implementation
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133 | *
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134 | * \return vector of strings containing parameter names
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135 | */
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136 | const ParameterNames_t& getParameterNames() const
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137 | { return ParameterNames; }
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138 |
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139 | /** States whether lower and upper boundaries should be used to constraint
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140 | * the parameter search for this function model.
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141 | *
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142 | * \return true - constraints should be used, false - else
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143 | */
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144 | bool isBoxConstraint() const {
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145 | return true;
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146 | }
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147 |
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148 | /** Returns a vector which are the lower boundaries for each parameter_t
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149 | * of this FunctionModel.
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150 | *
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151 | * \return vector of parameter_t resembling lowest allowed values
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152 | */
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153 | parameters_t getLowerBoxConstraints() const {
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154 | parameters_t lowerbound(getParameterDimension(), -std::numeric_limits<double>::max());
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155 | return lowerbound;
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156 | }
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157 |
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158 | /** Returns a vector which are the upper boundaries for each parameter_t
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159 | * of this FunctionModel.
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160 | *
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161 | * \return vector of parameter_t resembling highest allowed values
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162 | */
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163 | parameters_t getUpperBoxConstraints() const {
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164 | return parameters_t(getParameterDimension(), std::numeric_limits<double>::max());
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165 | }
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166 |
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167 | /** Returns a bound function to be used with TrainingData, extracting distances
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168 | * from a Fragment.
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169 | *
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170 | * \return bound function extracting distances from a fragment
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171 | */
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172 | FunctionModel::filter_t getSpecificFilter() const;
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173 |
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174 | /** Returns the number of arguments the underlying function requires.
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175 | *
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176 | * \return number of arguments of the function
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177 | */
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178 | size_t getSpecificArgumentCount() const
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179 | { return 0; }
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180 |
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181 | enum parameter_enum_t {
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182 | energy_offset=0,
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183 | MAXPARAMS
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184 | };
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185 |
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186 | private:
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187 | //!> parameter vector with parameters as in enum parameter_enum_t
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188 | parameters_t params;
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189 |
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190 | //!> static definitions of the parameter name for this potential
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191 | static const ParameterNames_t ParameterNames;
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192 |
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193 | //!> static token of this potential type
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194 | static const std::string potential_token;
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195 |
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196 | //!> internal coordinator object for converting arguments_t
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197 | static Coordinator::ptr coordinator;
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198 | };
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199 |
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200 | #endif /* CONSTANTPOTENTIAL_HPP_ */
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