source: src/Potentials/EmpiricalPotential.hpp@ 05f437

Action_Thermostats Add_AtomRandomPerturbation Add_FitFragmentPartialChargesAction Add_RotateAroundBondAction Add_SelectAtomByNameAction Added_ParseSaveFragmentResults AddingActions_SaveParseParticleParameters Adding_Graph_to_ChangeBondActions Adding_MD_integration_tests Adding_ParticleName_to_Atom Adding_StructOpt_integration_tests AtomFragments Automaking_mpqc_open AutomationFragmentation_failures Candidate_v1.5.4 Candidate_v1.6.0 Candidate_v1.6.1 ChangeBugEmailaddress ChangingTestPorts ChemicalSpaceEvaluator CombiningParticlePotentialParsing Combining_Subpackages Debian_Package_split Debian_package_split_molecuildergui_only Disabling_MemDebug Docu_Python_wait EmpiricalPotential_contain_HomologyGraph EmpiricalPotential_contain_HomologyGraph_documentation Enable_parallel_make_install Enhance_userguide Enhanced_StructuralOptimization Enhanced_StructuralOptimization_continued Example_ManyWaysToTranslateAtom Exclude_Hydrogens_annealWithBondGraph FitPartialCharges_GlobalError Fix_BoundInBox_CenterInBox_MoleculeActions Fix_ChargeSampling_PBC Fix_ChronosMutex Fix_FitPartialCharges Fix_FitPotential_needs_atomicnumbers Fix_ForceAnnealing Fix_IndependentFragmentGrids Fix_ParseParticles Fix_ParseParticles_split_forward_backward_Actions Fix_PopActions Fix_QtFragmentList_sorted_selection Fix_Restrictedkeyset_FragmentMolecule Fix_StatusMsg Fix_StepWorldTime_single_argument Fix_Verbose_Codepatterns Fix_fitting_potentials Fixes ForceAnnealing_goodresults ForceAnnealing_oldresults ForceAnnealing_tocheck ForceAnnealing_with_BondGraph ForceAnnealing_with_BondGraph_continued ForceAnnealing_with_BondGraph_continued_betteresults ForceAnnealing_with_BondGraph_contraction-expansion FragmentAction_writes_AtomFragments FragmentMolecule_checks_bonddegrees GeometryObjects Gui_Fixes Gui_displays_atomic_force_velocity ImplicitCharges IndependentFragmentGrids IndependentFragmentGrids_IndividualZeroInstances IndependentFragmentGrids_IntegrationTest IndependentFragmentGrids_Sole_NN_Calculation JobMarket_RobustOnKillsSegFaults JobMarket_StableWorkerPool JobMarket_unresolvable_hostname_fix MoreRobust_FragmentAutomation ODR_violation_mpqc_open PartialCharges_OrthogonalSummation PdbParser_setsAtomName PythonUI_with_named_parameters QtGui_reactivate_TimeChanged_changes Recreated_GuiChecks Rewrite_FitPartialCharges RotateToPrincipalAxisSystem_UndoRedo SaturateAtoms_findBestMatching SaturateAtoms_singleDegree StoppableMakroAction Subpackage_CodePatterns Subpackage_JobMarket Subpackage_LinearAlgebra Subpackage_levmar Subpackage_mpqc_open Subpackage_vmg Switchable_LogView ThirdParty_MPQC_rebuilt_buildsystem TrajectoryDependenant_MaxOrder TremoloParser_IncreasedPrecision TremoloParser_MultipleTimesteps TremoloParser_setsAtomName Ubuntu_1604_changes stable
Last change on this file since 05f437 was 6efcae, checked in by Frederik Heber <heber@…>, 12 years ago

SerializablePotential is new type to be stored in PotentialRegistry.

  • added new class SerializablePotential with operator<<() and ..>>() and a a set of virtual functions to be implemented in deriving classes.
  • added unit test SerializablePotentialUnitTest and mock implementation of such a SerializablePotential.
  • added exceptions, thrown when parsing of potential containing line fails.
  • NOTE: empty name/key of a parameter are not printed on output.
  • Property mode set to 100644
File size: 2.0 KB
Line 
1/*
2 * EmpiricalPotential.hpp
3 *
4 * Created on: Sep 26, 2012
5 * Author: heber
6 */
7
8#ifndef EMPIRICALPOTENTIAL_HPP_
9#define EMPIRICALPOTENTIAL_HPP_
10
11
12// include config.h
13#ifdef HAVE_CONFIG_H
14#include <config.h>
15#endif
16
17#include <vector>
18
19#include "FunctionApproximation/FunctionArgument.hpp"
20
21/** An EmpiricalPotential is a function that is given a vector of objects as
22 * arguments which it uses to evaluate an internal function and returns a
23 * value representing the energy of this configuration indicated by the
24 * arguments.
25 *
26 * It is to be used inside an std::accumulate function after a vector of
27 * arguments (i.e. a vector of a vector) has been prepared initially.
28 *
29 */
30class EmpiricalPotential
31{
32public:
33 //!> typedef for the argument vector as input to the function
34 typedef std::vector<argument_t> arguments_t;
35 //!> typedef for a single result degree of freedom
36 typedef double result_t;
37 //!> typedef for the result vector as returned by the function
38 typedef std::vector<result_t> results_t;
39 //!> typedef for the components of the derivative
40 typedef std::vector<result_t> derivative_components_t;
41
42 /** Default constructor for class EmpiricalPotential.
43 *
44 */
45 EmpiricalPotential() {}
46
47 /** Destructor for class EmpiricalPotential.
48 *
49 */
50 virtual ~EmpiricalPotential() {}
51
52 /** Evaluates the function with the given \a arguments and the current set of
53 * parameters.
54 *
55 * \param arguments set of arguments as input variables to the function
56 * \return result of the function
57 */
58 virtual results_t operator()(const arguments_t &arguments) const=0;
59
60 /** Evaluates the derivative of the function with the given \a arguments
61 * for each component.
62 *
63 * \param arguments set of arguments as input variables to the function
64 * \return result vector containing the derivative with respect to each
65 * input comonent of the function
66 */
67 virtual derivative_components_t derivative(const arguments_t &arguments) const=0;
68};
69
70#endif /* EMPIRICALPOTENTIAL_HPP_ */
Note: See TracBrowser for help on using the repository browser.