| 1 | /* | 
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| 2 | * XmlParser.hpp | 
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| 3 | * | 
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| 4 | *  Created on: Mar 23, 2012 | 
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| 5 | *      Author: heber | 
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| 6 | */ | 
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| 7 |  | 
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| 8 | #ifndef XMLPARSER_HPP_ | 
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| 9 | #define XMLPARSER_HPP_ | 
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| 10 |  | 
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| 11 | // include config.h | 
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| 12 | #ifdef HAVE_CONFIG_H | 
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| 13 | #include <config.h> | 
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| 14 | #endif | 
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| 15 |  | 
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| 16 | #include <map> | 
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| 17 | #include <string> | 
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| 18 |  | 
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| 19 | #include "FormatParser.hpp" | 
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| 20 | #include "FormatParserTrait.hpp" | 
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| 21 | #include "FormatParserInterface.hpp" | 
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| 22 | #include "FormatParser_common.hpp" | 
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| 23 | #include "ParserTypes.hpp" | 
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| 24 |  | 
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| 25 | #include "LinearAlgebra/RealSpaceMatrix.hpp" | 
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| 26 | #include "LinearAlgebra/Vector.hpp" | 
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| 27 |  | 
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| 28 | // declaration of specialized FormatParserTrait | 
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| 29 | template<> | 
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| 30 | struct FormatParserTrait<xml> | 
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| 31 | { | 
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| 32 | //!> Name of the parser | 
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| 33 | static const std::string name; | 
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| 34 | //!> suffix of the files the parser understands to read and write | 
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| 35 | static const std::string suffix; | 
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| 36 | //!> ParserTypes enumeration for the parser | 
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| 37 | static const enum ParserTypes type; | 
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| 38 | }; | 
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| 39 |  | 
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| 40 | class ParserXmlUnitTest; | 
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| 41 |  | 
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| 42 | /** | 
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| 43 | * Parser for XYZ files. | 
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| 44 | */ | 
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| 45 | template <> | 
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| 46 | class FormatParser< xml >  : virtual public FormatParserInterface, public FormatParser_common | 
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| 47 | { | 
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| 48 | //!> grant unit test access to private parts | 
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| 49 | friend class ParserXmlUnitTest; | 
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| 50 | public: | 
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| 51 | FormatParser(); | 
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| 52 | virtual ~FormatParser(); | 
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| 53 | void load(std::istream* file); | 
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| 54 | void save(std::ostream* file, const std::vector<atom *> &atoms); | 
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| 55 |  | 
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| 56 | protected: | 
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| 57 | void AtomInserted(atomId_t); | 
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| 58 | void AtomRemoved(atomId_t); | 
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| 59 |  | 
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| 60 | private: | 
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| 61 | //!> structure that contains all information from the xml file | 
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| 62 | struct scafacos { | 
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| 63 | std::string name; | 
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| 64 | std::string description; | 
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| 65 | std::string reference_method; | 
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| 66 | double error_potential; | 
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| 67 | double error_field; | 
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| 68 | struct configuration { | 
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| 69 | Vector offset; | 
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| 70 | RealSpaceMatrix box; | 
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| 71 | bool periodicity[NDIM]; | 
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| 72 | std::string epsilon; | 
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| 73 |  | 
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| 74 | struct particle { | 
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| 75 | Vector position; | 
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| 76 | double q; | 
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| 77 | double potential; | 
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| 78 | Vector field; | 
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| 79 |  | 
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| 80 | bool operator==(const particle &p) const; | 
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| 81 | bool operator!=(const particle &p) const { | 
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| 82 | return !((*this) == p); | 
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| 83 | } | 
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| 84 | }; | 
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| 85 | std::vector<struct particle> p; | 
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| 86 |  | 
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| 87 | bool operator==(const configuration &c) const; | 
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| 88 | bool operator!=(const configuration &c) const { | 
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| 89 | return !((*this) == c); | 
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| 90 | } | 
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| 91 | } config; | 
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| 92 |  | 
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| 93 | bool operator==(const scafacos &s) const; | 
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| 94 | bool operator!=(const scafacos &s) const { | 
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| 95 | return !((*this) == s); | 
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| 96 | } | 
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| 97 | } data; | 
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| 98 |  | 
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| 99 | //!> additional parser-specific information for an atom. | 
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| 100 | struct additionalAtomInfo { | 
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| 101 | /** Default constructor for additionalAtomInfo. | 
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| 102 | * | 
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| 103 | * Sets all parser-specific values to zero. | 
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| 104 | */ | 
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| 105 | additionalAtomInfo() : | 
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| 106 | charge(0.), | 
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| 107 | potential(0), | 
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| 108 | field(zeroVec) | 
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| 109 | {} | 
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| 110 |  | 
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| 111 | /** Default constructor for additionalAtomInfo. | 
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| 112 | * | 
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| 113 | */ | 
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| 114 | additionalAtomInfo(double _charge, double _potential, const Vector& _field) : | 
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| 115 | charge(_charge), | 
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| 116 | potential(_potential), | 
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| 117 | field(_field) | 
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| 118 | {} | 
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| 119 |  | 
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| 120 | //!> charge of the atom | 
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| 121 | double charge; | 
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| 122 | //!> potential at position of atom | 
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| 123 | double potential; | 
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| 124 | //!> field at position of atom | 
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| 125 | Vector field; | 
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| 126 | }; | 
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| 127 |  | 
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| 128 | //!> typedef for map to associate additional parser-specific information to each atom. | 
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| 129 | typedef std::map< atomId_t, additionalAtomInfo> AtomInfoMap_t; | 
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| 130 |  | 
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| 131 | //!> map to associate additional parser-specific information to each atom. | 
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| 132 | AtomInfoMap_t additionalAtomData; | 
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| 133 |  | 
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| 134 | //!> static instance with default additional atom information | 
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| 135 | static additionalAtomInfo defaultAtomInfo; | 
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| 136 |  | 
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| 137 | /** Getter for additionalAtomInfo. | 
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| 138 | * | 
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| 139 | * @param _atom constant ref to atom | 
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| 140 | * @return constant reference to additional atom info container, | 
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| 141 | *         otherwise to default atom info | 
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| 142 | */ | 
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| 143 | const additionalAtomInfo& getAtomData(const atom &_atom) const; | 
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| 144 | }; | 
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| 145 |  | 
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| 146 |  | 
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| 147 | #endif /* XMLPARSER_HPP_ */ | 
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