| [d2596b] | 1 | /* | 
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|  | 2 | * XmlParser.hpp | 
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|  | 3 | * | 
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|  | 4 | *  Created on: Mar 23, 2012 | 
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|  | 5 | *      Author: heber | 
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|  | 6 | */ | 
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|  | 7 |  | 
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|  | 8 | #ifndef XMLPARSER_HPP_ | 
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|  | 9 | #define XMLPARSER_HPP_ | 
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|  | 10 |  | 
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|  | 11 | // include config.h | 
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|  | 12 | #ifdef HAVE_CONFIG_H | 
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|  | 13 | #include <config.h> | 
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|  | 14 | #endif | 
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|  | 15 |  | 
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| [3d0892] | 16 | #include <map> | 
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| [d2596b] | 17 | #include <string> | 
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|  | 18 |  | 
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|  | 19 | #include "FormatParser.hpp" | 
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|  | 20 | #include "FormatParserTrait.hpp" | 
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|  | 21 | #include "FormatParserInterface.hpp" | 
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|  | 22 | #include "FormatParser_common.hpp" | 
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|  | 23 | #include "ParserTypes.hpp" | 
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|  | 24 |  | 
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|  | 25 | #include "LinearAlgebra/RealSpaceMatrix.hpp" | 
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|  | 26 | #include "LinearAlgebra/Vector.hpp" | 
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|  | 27 |  | 
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|  | 28 | // declaration of specialized FormatParserTrait | 
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|  | 29 | template<> | 
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|  | 30 | struct FormatParserTrait<xml> | 
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|  | 31 | { | 
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|  | 32 | //!> Name of the parser | 
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|  | 33 | static const std::string name; | 
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|  | 34 | //!> suffix of the files the parser understands to read and write | 
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|  | 35 | static const std::string suffix; | 
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|  | 36 | //!> ParserTypes enumeration for the parser | 
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|  | 37 | static const enum ParserTypes type; | 
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|  | 38 | }; | 
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|  | 39 |  | 
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|  | 40 | class ParserXmlUnitTest; | 
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|  | 41 |  | 
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|  | 42 | /** | 
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|  | 43 | * Parser for XYZ files. | 
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|  | 44 | */ | 
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|  | 45 | template <> | 
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|  | 46 | class FormatParser< xml >  : virtual public FormatParserInterface, public FormatParser_common | 
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|  | 47 | { | 
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|  | 48 | //!> grant unit test access to private parts | 
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|  | 49 | friend class ParserXmlUnitTest; | 
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| [856d05] | 50 | //!> grant mem debugger access | 
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|  | 51 | friend void AddStaticEntitiestoIgnoreList(); | 
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| [d2596b] | 52 | public: | 
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|  | 53 | FormatParser(); | 
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|  | 54 | virtual ~FormatParser(); | 
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|  | 55 | void load(std::istream* file); | 
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| [fac58f] | 56 | void save(std::ostream* file, const std::vector<const atom *> &atoms); | 
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| [d2596b] | 57 |  | 
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| [3d0892] | 58 | protected: | 
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|  | 59 | void AtomInserted(atomId_t); | 
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|  | 60 | void AtomRemoved(atomId_t); | 
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|  | 61 |  | 
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| [d2596b] | 62 | private: | 
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|  | 63 | //!> structure that contains all information from the xml file | 
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|  | 64 | struct scafacos { | 
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|  | 65 | std::string name; | 
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|  | 66 | std::string description; | 
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|  | 67 | std::string reference_method; | 
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|  | 68 | double error_potential; | 
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|  | 69 | double error_field; | 
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|  | 70 | struct configuration { | 
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|  | 71 | Vector offset; | 
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|  | 72 | RealSpaceMatrix box; | 
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|  | 73 | bool periodicity[NDIM]; | 
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|  | 74 | std::string epsilon; | 
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|  | 75 |  | 
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|  | 76 | struct particle { | 
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|  | 77 | Vector position; | 
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|  | 78 | double q; | 
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|  | 79 | double potential; | 
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|  | 80 | Vector field; | 
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|  | 81 |  | 
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|  | 82 | bool operator==(const particle &p) const; | 
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|  | 83 | bool operator!=(const particle &p) const { | 
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|  | 84 | return !((*this) == p); | 
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|  | 85 | } | 
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|  | 86 | }; | 
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|  | 87 | std::vector<struct particle> p; | 
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|  | 88 |  | 
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|  | 89 | bool operator==(const configuration &c) const; | 
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|  | 90 | bool operator!=(const configuration &c) const { | 
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|  | 91 | return !((*this) == c); | 
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|  | 92 | } | 
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|  | 93 | } config; | 
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|  | 94 |  | 
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|  | 95 | bool operator==(const scafacos &s) const; | 
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|  | 96 | bool operator!=(const scafacos &s) const { | 
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|  | 97 | return !((*this) == s); | 
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|  | 98 | } | 
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|  | 99 | } data; | 
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| [3d0892] | 100 |  | 
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|  | 101 | //!> additional parser-specific information for an atom. | 
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|  | 102 | struct additionalAtomInfo { | 
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|  | 103 | /** Default constructor for additionalAtomInfo. | 
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|  | 104 | * | 
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|  | 105 | * Sets all parser-specific values to zero. | 
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|  | 106 | */ | 
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|  | 107 | additionalAtomInfo() : | 
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|  | 108 | charge(0.), | 
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|  | 109 | potential(0), | 
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|  | 110 | field(zeroVec) | 
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|  | 111 | {} | 
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|  | 112 |  | 
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|  | 113 | /** Default constructor for additionalAtomInfo. | 
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|  | 114 | * | 
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|  | 115 | */ | 
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|  | 116 | additionalAtomInfo(double _charge, double _potential, const Vector& _field) : | 
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|  | 117 | charge(_charge), | 
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|  | 118 | potential(_potential), | 
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|  | 119 | field(_field) | 
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|  | 120 | {} | 
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|  | 121 |  | 
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|  | 122 | //!> charge of the atom | 
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|  | 123 | double charge; | 
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|  | 124 | //!> potential at position of atom | 
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|  | 125 | double potential; | 
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|  | 126 | //!> field at position of atom | 
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|  | 127 | Vector field; | 
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|  | 128 | }; | 
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|  | 129 |  | 
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|  | 130 | //!> typedef for map to associate additional parser-specific information to each atom. | 
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|  | 131 | typedef std::map< atomId_t, additionalAtomInfo> AtomInfoMap_t; | 
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|  | 132 |  | 
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|  | 133 | //!> map to associate additional parser-specific information to each atom. | 
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|  | 134 | AtomInfoMap_t additionalAtomData; | 
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|  | 135 |  | 
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|  | 136 | //!> static instance with default additional atom information | 
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|  | 137 | static additionalAtomInfo defaultAtomInfo; | 
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|  | 138 |  | 
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|  | 139 | /** Getter for additionalAtomInfo. | 
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|  | 140 | * | 
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|  | 141 | * @param _atom constant ref to atom | 
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|  | 142 | * @return constant reference to additional atom info container, | 
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|  | 143 | *         otherwise to default atom info | 
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|  | 144 | */ | 
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|  | 145 | const additionalAtomInfo& getAtomData(const atom &_atom) const; | 
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| [d2596b] | 146 | }; | 
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|  | 147 |  | 
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|  | 148 |  | 
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|  | 149 | #endif /* XMLPARSER_HPP_ */ | 
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