source: src/Parser/Psi3Parser_Parameters.cpp@ 94d5ac6

Action_Thermostats Add_AtomRandomPerturbation Add_FitFragmentPartialChargesAction Add_RotateAroundBondAction Add_SelectAtomByNameAction Added_ParseSaveFragmentResults AddingActions_SaveParseParticleParameters Adding_Graph_to_ChangeBondActions Adding_MD_integration_tests Adding_ParticleName_to_Atom Adding_StructOpt_integration_tests AtomFragments Automaking_mpqc_open AutomationFragmentation_failures Candidate_v1.5.4 Candidate_v1.6.0 Candidate_v1.6.1 ChangeBugEmailaddress ChangingTestPorts ChemicalSpaceEvaluator CombiningParticlePotentialParsing Combining_Subpackages Debian_Package_split Debian_package_split_molecuildergui_only Disabling_MemDebug Docu_Python_wait EmpiricalPotential_contain_HomologyGraph EmpiricalPotential_contain_HomologyGraph_documentation Enable_parallel_make_install Enhance_userguide Enhanced_StructuralOptimization Enhanced_StructuralOptimization_continued Example_ManyWaysToTranslateAtom Exclude_Hydrogens_annealWithBondGraph FitPartialCharges_GlobalError Fix_BoundInBox_CenterInBox_MoleculeActions Fix_ChargeSampling_PBC Fix_ChronosMutex Fix_FitPartialCharges Fix_FitPotential_needs_atomicnumbers Fix_ForceAnnealing Fix_IndependentFragmentGrids Fix_ParseParticles Fix_ParseParticles_split_forward_backward_Actions Fix_PopActions Fix_QtFragmentList_sorted_selection Fix_Restrictedkeyset_FragmentMolecule Fix_StatusMsg Fix_StepWorldTime_single_argument Fix_Verbose_Codepatterns Fix_fitting_potentials Fixes ForceAnnealing_goodresults ForceAnnealing_oldresults ForceAnnealing_tocheck ForceAnnealing_with_BondGraph ForceAnnealing_with_BondGraph_continued ForceAnnealing_with_BondGraph_continued_betteresults ForceAnnealing_with_BondGraph_contraction-expansion FragmentAction_writes_AtomFragments FragmentMolecule_checks_bonddegrees GeometryObjects Gui_Fixes Gui_displays_atomic_force_velocity ImplicitCharges IndependentFragmentGrids IndependentFragmentGrids_IndividualZeroInstances IndependentFragmentGrids_IntegrationTest IndependentFragmentGrids_Sole_NN_Calculation JobMarket_RobustOnKillsSegFaults JobMarket_StableWorkerPool JobMarket_unresolvable_hostname_fix MoreRobust_FragmentAutomation ODR_violation_mpqc_open PartialCharges_OrthogonalSummation PdbParser_setsAtomName PythonUI_with_named_parameters QtGui_reactivate_TimeChanged_changes Recreated_GuiChecks Rewrite_FitPartialCharges RotateToPrincipalAxisSystem_UndoRedo SaturateAtoms_findBestMatching SaturateAtoms_singleDegree StoppableMakroAction Subpackage_CodePatterns Subpackage_JobMarket Subpackage_LinearAlgebra Subpackage_levmar Subpackage_mpqc_open Subpackage_vmg Switchable_LogView ThirdParty_MPQC_rebuilt_buildsystem TrajectoryDependenant_MaxOrder TremoloParser_IncreasedPrecision TremoloParser_MultipleTimesteps TremoloParser_setsAtomName Ubuntu_1604_changes stable
Last change on this file since 94d5ac6 was 94d5ac6, checked in by Frederik Heber <heber@…>, 12 years ago

FIX: As we use GSL internally, we are as of now required to use GPL v2 license.

  • GNU Scientific Library is used at every place in the code, especially the sub-package LinearAlgebra is based on it which in turn is used really everywhere in the remainder of MoleCuilder. Hence, we have to use the GPL license for the whole of MoleCuilder. In effect, GPL's COPYING was present all along and stated the terms of the GPL v2 license.
  • Hence, I added the default GPL v2 disclaimer to every source file and removed the note about a (actually missing) LICENSE file.
  • also, I added a help-redistribute action which again gives the disclaimer of the GPL v2.
  • also, I changed in the disclaimer that is printed at every program start in builder_init.cpp.
  • TEST: Added check on GPL statement present in every module to test CodeChecks project-disclaimer.
  • Property mode set to 100644
File size: 8.4 KB
Line 
1/*
2 * Project: MoleCuilder
3 * Description: creates and alters molecular systems
4 * Copyright (C) 2010-2012 University of Bonn. All rights reserved.
5 *
6 *
7 * This file is part of MoleCuilder.
8 *
9 * MoleCuilder is free software: you can redistribute it and/or modify
10 * it under the terms of the GNU General Public License as published by
11 * the Free Software Foundation, either version 2 of the License, or
12 * (at your option) any later version.
13 *
14 * MoleCuilder is distributed in the hope that it will be useful,
15 * but WITHOUT ANY WARRANTY; without even the implied warranty of
16 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
17 * GNU General Public License for more details.
18 *
19 * You should have received a copy of the GNU General Public License
20 * along with MoleCuilder. If not, see <http://www.gnu.org/licenses/>.
21 */
22
23/*
24 * Psi3Parser_Parameters.cpp
25 *
26 * Created on: Feb 3, 2011
27 * Author: heber
28 */
29
30// include config.h
31#ifdef HAVE_CONFIG_H
32#include <config.h>
33#endif
34
35#include "CodePatterns/MemDebug.hpp"
36
37#include <string>
38
39#include "CodePatterns/Assert.hpp"
40#include "CodePatterns/Log.hpp"
41
42#include "Psi3Parser.hpp"
43
44#include "Psi3Parser_Parameters.hpp"
45
46#include "Parameters/Parameter.hpp"
47
48// TODO: Value<bool>::getAsString() must be defined inline otherwise we get multiple definition of virtual thunk compilation errors
49template <>
50inline const std::string Value<bool>::getAsString() const throw(ParameterValueException)
51{
52 if(!ValueSet)
53 throw ParameterValueException();
54 if (value)
55 return std::string("yes");
56 else
57 return std::string("no");
58}
59
60// TODO: Value<bool>::setAsString must be defined inline otherwise we get multiple definition of virtual thunk compilation errors
61template <>
62inline void Value<bool>::setAsString(const std::string _value) throw(ParameterException)
63{
64 if (_value == std::string("yes")) {
65 set(true);
66 } else if (_value == std::string("no")) {
67 set(false);
68 } else {
69 throw ParameterValueException();
70 }
71}
72
73
74Psi3Parser_Parameters::Psi3Parser_Parameters()
75{
76 Init();
77}
78
79void Psi3Parser_Parameters::Init()
80{
81 // add all known basis
82 //initBasis();
83
84 // add all parameter names
85 {
86 ParamNames.clear();
87 ParamNames.resize(unknownParam);
88 ParamNames[labelParam] = "label";
89 ParamNames[jobtypeParam] = "jobtype";
90 ParamNames[wavefunctionParam] = "wfn";
91 ParamNames[maxiterParam] = "maxiter";
92 ParamNames[referenceParam] = "reference";
93 ParamNames[basisParam] = "basis";
94 ParamNames[freeze_coreParam] = "freeze_core";
95 ParamNames[unitsParam] = "units";
96 ParamNames[dertypeParam] = "dertype";
97 ParamNames[originParam] = "origin";
98 ParamNames[multiplicityParam] = "multp";
99 ParamNames[chargeParam] = "charge";
100 ParamNames[soccParam] = "socc";
101 ParamNames[doccParam] = "docc";
102 ParamNames[subgroupParam] = "subgroup";
103 ParamNames[unique_axisParam] = "unique_axis";
104 }
105
106 // create freeze_core parameter
107 {
108 ValidFreezeCore.clear();
109 ValidFreezeCore.resize(unknownFreezeCore);
110 ValidFreezeCore[YES]="yes";
111 ValidFreezeCore[TRUE]="true";
112 ValidFreezeCore[NO]="no";
113 ValidFreezeCore[FALSE]="false";
114 ValidFreezeCore[SMALL]="small";
115 ValidFreezeCore[LARGE]="large";
116 appendParameter(
117 new Parameter<std::string>(
118 ParamNames[freeze_coreParam],
119 ValidFreezeCore,
120 ValidFreezeCore[YES]));
121 }
122
123 // create units parameter
124 {
125 ValidUnits.clear();
126 ValidUnits.resize(unknownUnits);
127 ValidUnits[angstrom]="angstrom";
128 ValidUnits[bohr]="bohr";
129 appendParameter(
130 new Parameter<std::string>(
131 ParamNames[unitsParam],
132 ValidUnits,
133 ValidUnits[angstrom]));
134 }
135
136 // create dertype parameter
137 {
138 ValidDerivativeType.clear();
139 ValidDerivativeType.resize(unknownDerivativeType);
140 ValidDerivativeType[NONE]="none";
141 appendParameter(
142 new Parameter<std::string>(
143 ParamNames[dertypeParam],
144 ValidDerivativeType,
145 ValidDerivativeType[NONE]));
146 }
147
148 // create unique_axis parameter
149 {
150 ValidUniqueAxis.clear();
151 ValidUniqueAxis.resize(unknownUniqueAxis);
152 ValidUniqueAxis[X]="x";
153 ValidUniqueAxis[Y]="y";
154 ValidUniqueAxis[Z]="z";
155 appendParameter(
156 new Parameter<std::string>(
157 ParamNames[unique_axisParam],
158 ValidUniqueAxis,
159 ValidUniqueAxis[X]));
160 }
161
162 // create jobtype parameter
163 {
164 ValidJobtypes.clear();
165 ValidJobtypes.resize(unknownJobtype);
166 ValidJobtypes[SP]="sp";
167 ValidJobtypes[OPT]="opt";
168 ValidJobtypes[DISP]="disp";
169 ValidJobtypes[FREQ]="freq";
170 ValidJobtypes[SYMM_FREQ]="symm_freq";
171 ValidJobtypes[DBOC]="dboc";
172 ValidJobtypes[RESPONSE]="response";
173 appendParameter(
174 new Parameter<std::string>(
175 ParamNames[jobtypeParam],
176 ValidJobtypes,
177 ValidJobtypes[SP]));
178 }
179
180 // create wavefunction parameter
181 {
182 ValidWavefunction.clear();
183 ValidWavefunction.resize(unknownWavefunction);
184 ValidWavefunction[SCF]="scf";
185 ValidWavefunction[MP2]="mp2";
186 ValidWavefunction[MP2R12]="mp2r12";
187 ValidWavefunction[CIS]="cis";
188 ValidWavefunction[DETCI]="detci";
189 ValidWavefunction[CASSCF]="casscf";
190 ValidWavefunction[RASSCF]="rasscf";
191 ValidWavefunction[CCSD]="ccsd";
192 ValidWavefunction[CCSD_T]="ccsd_t";
193 ValidWavefunction[BCCD]="bccd";
194 ValidWavefunction[BCCD_T]="bccd_t";
195 ValidWavefunction[EOM_CCSD]="eom_ccsd";
196 ValidWavefunction[ZAPTN]="zaptn";
197 appendParameter(
198 new Parameter<std::string>(
199 ParamNames[wavefunctionParam],
200 ValidWavefunction,
201 ValidWavefunction[SCF]));
202 }
203
204 // create reference parameter
205 {
206 ValidReference.clear();
207 ValidReference.resize(unknownReference);
208 ValidReference[RHF]="rhf";
209 ValidReference[ROHF]="rohf";
210 ValidReference[UHF]="uhf";
211 ValidReference[TWOCON]="twocon";
212 appendParameter(
213 new Parameter<std::string>(
214 ParamNames[referenceParam],
215 ValidReference,
216 ValidReference[RHF]));
217 }
218
219 // add all continuous parameters
220 {
221 appendParameter(new Parameter<string>(ParamNames[labelParam], std::string("unknown job")));
222 appendParameter(new Parameter<int>(ParamNames[maxiterParam], 80));
223 appendParameter(new Parameter<string>(ParamNames[basisParam], std::string("cc-pVTZ")));
224 appendParameter(new Parameter<string>(ParamNames[originParam], std::string("(0.0\t0.0\t0.0)"))); // TODO: this should be a vector
225 appendParameter(new Parameter<int>(ParamNames[multiplicityParam], 1));
226 appendParameter(new Parameter<int>(ParamNames[chargeParam], 0));
227 appendParameter(new Parameter<string>(ParamNames[soccParam], std::string("()")));
228 appendParameter(new Parameter<string>(ParamNames[doccParam], std::string("()")));
229 appendParameter(new Parameter<string>(ParamNames[subgroupParam], std::string("")));
230 }
231}
232
233Psi3Parser_Parameters::~Psi3Parser_Parameters()
234{}
235
236/** Getter for a specific Parameter.
237 *
238 * @param param index among enum Parameters
239 * @return value of the desired Parameters
240 */
241const std::string Psi3Parser_Parameters::getParameter(const enum Parameters param) const
242{
243 return FormatParser_Parameters::getParameter(ParamNames[param])->getAsString();
244}
245
246/** Setter for a specific Parameter.
247 *
248 * @param param index among enum Parameters
249 * @param _value value to set desired Parameter to
250 */
251void Psi3Parser_Parameters::setParameter(const enum Parameters param, const std::string &_value)
252{
253 const std::string &name = getParameterName(param);
254 FormatParser_Parameters::getParameter(name)->setAsString(_value);
255}
256
257/** Getter for name of a specific Parameter.
258 *
259 * @param param index among enum Parameters
260 * @return name of the desired Parameter
261 */
262const std::string &Psi3Parser_Parameters::getParameterName(const enum Parameters param) const
263{
264 return ParamNames[param];
265}
266
267/** Getter for name of a specific Reference.
268 *
269 * @param reference index among enum Reference
270 * @return name of the desired Reference
271 */
272const std::string &Psi3Parser_Parameters::getReferenceName(const enum Reference reference) const
273{
274 return ValidReference[reference];
275}
276
277/** Checks whether all elements in the world also have parameters in the basis.
278 *
279 * @return true - all elements parametrized, false - at least one element is missing.
280 */
281bool Psi3Parser_Parameters::checkWorldElementsAgainstCurrentBasis() const
282{
283 ELOG(0, "Psi3Parser_Parameters::checkWorldElementsAgainstCurrentBasis() - not implemented yet.");
284
285 return false;
286}
287
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