Action_Thermostats
        Add_AtomRandomPerturbation
        Add_FitFragmentPartialChargesAction
        Add_RotateAroundBondAction
        Add_SelectAtomByNameAction
        Added_ParseSaveFragmentResults
        AddingActions_SaveParseParticleParameters
        Adding_Graph_to_ChangeBondActions
        Adding_MD_integration_tests
        Adding_ParticleName_to_Atom
        Adding_StructOpt_integration_tests
        AtomFragments
        Automaking_mpqc_open
        AutomationFragmentation_failures
        Candidate_v1.5.4
        Candidate_v1.6.0
        Candidate_v1.6.1
        Candidate_v1.7.0
        ChangeBugEmailaddress
        ChangingTestPorts
        ChemicalSpaceEvaluator
        CombiningParticlePotentialParsing
        Combining_Subpackages
        Debian_Package_split
        Debian_package_split_molecuildergui_only
        Disabling_MemDebug
        Docu_Python_wait
        EmpiricalPotential_contain_HomologyGraph
        EmpiricalPotential_contain_HomologyGraph_documentation
        Enable_parallel_make_install
        Enhance_userguide
        Enhanced_StructuralOptimization
        Enhanced_StructuralOptimization_continued
        Example_ManyWaysToTranslateAtom
        Exclude_Hydrogens_annealWithBondGraph
        FitPartialCharges_GlobalError
        Fix_BoundInBox_CenterInBox_MoleculeActions
        Fix_ChargeSampling_PBC
        Fix_ChronosMutex
        Fix_FitPartialCharges
        Fix_FitPotential_needs_atomicnumbers
        Fix_ForceAnnealing
        Fix_IndependentFragmentGrids
        Fix_ParseParticles
        Fix_ParseParticles_split_forward_backward_Actions
        Fix_PopActions
        Fix_QtFragmentList_sorted_selection
        Fix_Restrictedkeyset_FragmentMolecule
        Fix_StatusMsg
        Fix_StepWorldTime_single_argument
        Fix_Verbose_Codepatterns
        Fix_fitting_potentials
        Fixes
        ForceAnnealing_goodresults
        ForceAnnealing_oldresults
        ForceAnnealing_tocheck
        ForceAnnealing_with_BondGraph
        ForceAnnealing_with_BondGraph_continued
        ForceAnnealing_with_BondGraph_continued_betteresults
        ForceAnnealing_with_BondGraph_contraction-expansion
        FragmentAction_writes_AtomFragments
        FragmentMolecule_checks_bonddegrees
        GeometryObjects
        Gui_Fixes
        Gui_displays_atomic_force_velocity
        ImplicitCharges
        IndependentFragmentGrids
        IndependentFragmentGrids_IndividualZeroInstances
        IndependentFragmentGrids_IntegrationTest
        IndependentFragmentGrids_Sole_NN_Calculation
        JobMarket_RobustOnKillsSegFaults
        JobMarket_StableWorkerPool
        JobMarket_unresolvable_hostname_fix
        MoreRobust_FragmentAutomation
        ODR_violation_mpqc_open
        PartialCharges_OrthogonalSummation
        PdbParser_setsAtomName
        PythonUI_with_named_parameters
        QtGui_reactivate_TimeChanged_changes
        Recreated_GuiChecks
        Rewrite_FitPartialCharges
        RotateToPrincipalAxisSystem_UndoRedo
        SaturateAtoms_findBestMatching
        SaturateAtoms_singleDegree
        StoppableMakroAction
        Subpackage_CodePatterns
        Subpackage_JobMarket
        Subpackage_LinearAlgebra
        Subpackage_levmar
        Subpackage_mpqc_open
        Subpackage_vmg
        Switchable_LogView
        ThirdParty_MPQC_rebuilt_buildsystem
        TrajectoryDependenant_MaxOrder
        TremoloParser_IncreasedPrecision
        TremoloParser_MultipleTimesteps
        TremoloParser_setsAtomName
        Ubuntu_1604_changes
        stable
      
      
        
          | Last change
 on this file since f4b5b7 was             986ed3, checked in by Tillmann Crueger <crueger@…>, 15 years ago | 
        
          | 
COMPILE_SPEEDUP: Replaced all implicit inclusions of iostream with forwards
 | 
        
          | 
              
Property                 mode
 set to                 100644 | 
        
          | File size:
            2.6 KB | 
      
      
| Rev | Line |  | 
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| [43dad6] | 1 | /* | 
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|  | 2 | * PcpParser.hpp | 
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|  | 3 | * | 
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|  | 4 | *  Created on: 12.06.2010 | 
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|  | 5 | *      Author: heber | 
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|  | 6 | */ | 
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|  | 7 |  | 
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|  | 8 | #ifndef PCPPARSER_HPP_ | 
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|  | 9 | #define PCPPARSER_HPP_ | 
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|  | 10 |  | 
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| [986ed3] | 11 | #include <iosfwd> | 
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| [650ca8c] | 12 | #include "Parser/FormatParser.hpp" | 
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| [43dad6] | 13 |  | 
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|  | 14 | /** | 
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|  | 15 | * Parser for PCP config files. | 
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|  | 16 | */ | 
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|  | 17 | class PcpParser : public FormatParser { | 
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|  | 18 | public: | 
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|  | 19 | PcpParser(); | 
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|  | 20 | ~PcpParser(); | 
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|  | 21 | void load(std::istream* file); | 
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|  | 22 | void save(std::ostream* file); | 
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|  | 23 |  | 
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| [1b2d30] | 24 | bool operator==(const PcpParser& b) const; | 
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|  | 25 |  | 
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| [43dad6] | 26 | private: | 
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|  | 27 |  | 
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|  | 28 | void ParseThermostats(class ConfigFileBuffer * const fb); | 
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|  | 29 | void OutputAtoms(ostream *file, vector<atom *> &allatoms, map<int, int> &ZtoIndexMap); | 
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|  | 30 | void OutputElements(ostream *file, vector<atom *> &allatoms, map<int, int> &ZtoIndexMap); | 
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| [650ca8c] | 31 | void CalculateOrbitals(vector<atom *> &allatoms); | 
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| [43dad6] | 32 |  | 
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|  | 33 | struct StructParallelization { | 
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|  | 34 | int ProcPEGamma; | 
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|  | 35 | int ProcPEPsi; | 
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|  | 36 | } Parallelization; | 
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|  | 37 |  | 
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|  | 38 | /* | 
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|  | 39 | * Contains all the paths and names | 
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|  | 40 | */ | 
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|  | 41 | struct StructPaths { | 
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|  | 42 | char *databasepath; | 
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|  | 43 | char *configname; | 
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|  | 44 | char *mainname; | 
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|  | 45 | char *defaultpath; | 
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|  | 46 | char *pseudopotpath; | 
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|  | 47 | } Paths; | 
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|  | 48 |  | 
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|  | 49 | /* | 
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|  | 50 | * Contains all Do/Don't switches | 
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|  | 51 | */ | 
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|  | 52 | struct StructSwitches { | 
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|  | 53 | int DoConstrainedMD; | 
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|  | 54 | int DoOutVis; | 
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|  | 55 | int DoOutMes; | 
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|  | 56 | int DoOutNICS; | 
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|  | 57 | int DoOutOrbitals; | 
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|  | 58 | int DoOutCurrent; | 
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|  | 59 | int DoFullCurrent; | 
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|  | 60 | int DoPerturbation; | 
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|  | 61 | int DoWannier; | 
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|  | 62 | } Switches; | 
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|  | 63 |  | 
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|  | 64 | /* | 
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|  | 65 | * Contains parameters regarding localization of orbitals or magnetic perturbation | 
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|  | 66 | */ | 
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|  | 67 | struct StructLocalizedOrbitals { | 
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|  | 68 | int CommonWannier; | 
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|  | 69 | double SawtoothStart; | 
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|  | 70 | int VectorPlane; | 
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|  | 71 | double VectorCut; | 
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|  | 72 | int UseAddGramSch; | 
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|  | 73 | int Seed; | 
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|  | 74 | double EpsWannier; | 
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|  | 75 | } LocalizedOrbitals; | 
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|  | 76 |  | 
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|  | 77 | /* | 
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|  | 78 | * Contains all step count and other epsilon threshold parameters | 
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|  | 79 | */ | 
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|  | 80 | struct StructStepCounts { | 
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|  | 81 | int MaxMinStopStep; | 
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|  | 82 | int InitMaxMinStopStep; | 
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|  | 83 |  | 
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|  | 84 | int OutVisStep; | 
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|  | 85 | int OutSrcStep; | 
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|  | 86 | int MaxPsiStep; | 
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|  | 87 |  | 
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|  | 88 | int MaxOuterStep; | 
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|  | 89 |  | 
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|  | 90 | int MaxMinStep; | 
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|  | 91 | double RelEpsTotalEnergy; | 
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|  | 92 | double RelEpsKineticEnergy; | 
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|  | 93 | int MaxMinGapStopStep; | 
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|  | 94 | int MaxInitMinStep; | 
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|  | 95 | double InitRelEpsTotalEnergy; | 
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|  | 96 | double InitRelEpsKineticEnergy; | 
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|  | 97 | int InitMaxMinGapStopStep; | 
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|  | 98 | } StepCounts; | 
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|  | 99 |  | 
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|  | 100 | /* | 
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|  | 101 | * Contains all parameters specific to the plane wave basis set | 
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|  | 102 | */ | 
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|  | 103 | struct StructPlaneWaveSpecifics { | 
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|  | 104 | int PsiType; | 
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|  | 105 | int MaxPsiDouble; | 
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|  | 106 | int PsiMaxNoUp; | 
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|  | 107 | int PsiMaxNoDown; | 
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|  | 108 | double ECut; | 
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|  | 109 | int MaxLevel; | 
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|  | 110 | int RiemannTensor; | 
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|  | 111 | int LevRFactor; | 
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|  | 112 | int RiemannLevel; | 
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|  | 113 | int Lev0Factor; | 
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|  | 114 | int RTActualUse; | 
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|  | 115 | int AddPsis; | 
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|  | 116 | double RCut; | 
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|  | 117 | } PlaneWaveSpecifics; | 
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|  | 118 |  | 
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|  | 119 | bool FastParsing; | 
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|  | 120 |  | 
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|  | 121 | double Deltat; | 
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|  | 122 | int IsAngstroem; | 
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|  | 123 | int RelativeCoord; | 
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|  | 124 | int StructOpt; | 
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|  | 125 | int MaxTypes; | 
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|  | 126 | string basis; | 
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|  | 127 | }; | 
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|  | 128 |  | 
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|  | 129 | #endif /* PCPPARSER_HPP_ */ | 
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