Action_Thermostats
Add_AtomRandomPerturbation
Add_FitFragmentPartialChargesAction
Add_RotateAroundBondAction
Add_SelectAtomByNameAction
Added_ParseSaveFragmentResults
AddingActions_SaveParseParticleParameters
Adding_Graph_to_ChangeBondActions
Adding_MD_integration_tests
Adding_ParticleName_to_Atom
Adding_StructOpt_integration_tests
AtomFragments
Automaking_mpqc_open
AutomationFragmentation_failures
Candidate_v1.5.4
Candidate_v1.6.0
Candidate_v1.6.1
ChangeBugEmailaddress
ChangingTestPorts
ChemicalSpaceEvaluator
CombiningParticlePotentialParsing
Combining_Subpackages
Debian_Package_split
Debian_package_split_molecuildergui_only
Disabling_MemDebug
Docu_Python_wait
EmpiricalPotential_contain_HomologyGraph
EmpiricalPotential_contain_HomologyGraph_documentation
Enable_parallel_make_install
Enhance_userguide
Enhanced_StructuralOptimization
Enhanced_StructuralOptimization_continued
Example_ManyWaysToTranslateAtom
Exclude_Hydrogens_annealWithBondGraph
FitPartialCharges_GlobalError
Fix_BoundInBox_CenterInBox_MoleculeActions
Fix_ChargeSampling_PBC
Fix_ChronosMutex
Fix_FitPartialCharges
Fix_FitPotential_needs_atomicnumbers
Fix_ForceAnnealing
Fix_IndependentFragmentGrids
Fix_ParseParticles
Fix_ParseParticles_split_forward_backward_Actions
Fix_PopActions
Fix_QtFragmentList_sorted_selection
Fix_Restrictedkeyset_FragmentMolecule
Fix_StatusMsg
Fix_StepWorldTime_single_argument
Fix_Verbose_Codepatterns
Fix_fitting_potentials
Fixes
ForceAnnealing_goodresults
ForceAnnealing_oldresults
ForceAnnealing_tocheck
ForceAnnealing_with_BondGraph
ForceAnnealing_with_BondGraph_continued
ForceAnnealing_with_BondGraph_continued_betteresults
ForceAnnealing_with_BondGraph_contraction-expansion
FragmentAction_writes_AtomFragments
FragmentMolecule_checks_bonddegrees
GeometryObjects
Gui_Fixes
Gui_displays_atomic_force_velocity
ImplicitCharges
IndependentFragmentGrids
IndependentFragmentGrids_IndividualZeroInstances
IndependentFragmentGrids_IntegrationTest
IndependentFragmentGrids_Sole_NN_Calculation
JobMarket_RobustOnKillsSegFaults
JobMarket_StableWorkerPool
JobMarket_unresolvable_hostname_fix
MoreRobust_FragmentAutomation
ODR_violation_mpqc_open
PartialCharges_OrthogonalSummation
PdbParser_setsAtomName
PythonUI_with_named_parameters
QtGui_reactivate_TimeChanged_changes
Recreated_GuiChecks
Rewrite_FitPartialCharges
RotateToPrincipalAxisSystem_UndoRedo
SaturateAtoms_findBestMatching
SaturateAtoms_singleDegree
StoppableMakroAction
Subpackage_CodePatterns
Subpackage_JobMarket
Subpackage_LinearAlgebra
Subpackage_levmar
Subpackage_mpqc_open
Subpackage_vmg
Switchable_LogView
ThirdParty_MPQC_rebuilt_buildsystem
TrajectoryDependenant_MaxOrder
TremoloParser_IncreasedPrecision
TremoloParser_MultipleTimesteps
TremoloParser_setsAtomName
Ubuntu_1604_changes
stable
Last change
on this file since c1db05 was 56f73b, checked in by Frederik Heber <heber@…>, 14 years ago |
Added config.h also to all header files, code check test ascertain this in the future.
- as we want to use config.h to pass stuff such as MEMDEBUG, NDEBUG,
LOG_OBSERVER, we have to make sure that it is present in each and every
file.
- split up CodeChecks/testsuite.at: each test has its own .at file.
|
-
Property mode
set to
100644
|
File size:
3.1 KB
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Rev | Line | |
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[43dad6] | 1 | /*
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| 2 | * PcpParser.hpp
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| 3 | *
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| 4 | * Created on: 12.06.2010
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| 5 | * Author: heber
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| 6 | */
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| 7 |
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| 8 | #ifndef PCPPARSER_HPP_
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| 9 | #define PCPPARSER_HPP_
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| 10 |
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[56f73b] | 11 | // include config.h
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| 12 | #ifdef HAVE_CONFIG_H
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| 13 | #include <config.h>
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| 14 | #endif
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| 15 |
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| 16 |
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[986ed3] | 17 | #include <iosfwd>
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[650ca8c] | 18 | #include "Parser/FormatParser.hpp"
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[43dad6] | 19 |
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| 20 | /**
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| 21 | * Parser for PCP config files.
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| 22 | */
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| 23 | class PcpParser : public FormatParser {
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| 24 | public:
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| 25 | PcpParser();
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| 26 | ~PcpParser();
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| 27 | void load(std::istream* file);
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[73916f] | 28 | void save(std::ostream* file, const std::vector<atom *> &atoms);
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[43dad6] | 29 |
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[1b2d30] | 30 | bool operator==(const PcpParser& b) const;
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| 31 |
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[43dad6] | 32 | private:
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| 33 |
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| 34 | void ParseThermostats(class ConfigFileBuffer * const fb);
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[73916f] | 35 | void OutputAtoms(ostream *file, const std::vector<atom *> &allatoms, map<int, int> &ZtoIndexMap);
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| 36 | void OutputElements(ostream *file, const std::vector<atom *> &allatoms, map<int, int> &ZtoIndexMap);
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| 37 | void CalculateOrbitals(const std::vector<atom *> &allatoms);
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[43dad6] | 38 |
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[97b825] | 39 | class StructParallelization {
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| 40 | public:
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| 41 | StructParallelization();
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| 42 | ~StructParallelization();
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| 43 |
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[43dad6] | 44 | int ProcPEGamma;
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| 45 | int ProcPEPsi;
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| 46 | } Parallelization;
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| 47 |
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| 48 | /*
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| 49 | * Contains all the paths and names
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| 50 | */
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[97b825] | 51 | class StructPaths {
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| 52 | public:
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| 53 | StructPaths();
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| 54 | ~StructPaths();
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| 55 |
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[43dad6] | 56 | char *databasepath;
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| 57 | char *configname;
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| 58 | char *mainname;
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| 59 | char *defaultpath;
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| 60 | char *pseudopotpath;
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| 61 | } Paths;
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| 62 |
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| 63 | /*
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| 64 | * Contains all Do/Don't switches
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| 65 | */
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[97b825] | 66 | class StructSwitches {
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| 67 | public:
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| 68 | StructSwitches();
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| 69 | ~StructSwitches();
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| 70 |
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[43dad6] | 71 | int DoConstrainedMD;
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| 72 | int DoOutVis;
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| 73 | int DoOutMes;
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| 74 | int DoOutNICS;
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| 75 | int DoOutOrbitals;
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| 76 | int DoOutCurrent;
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| 77 | int DoFullCurrent;
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| 78 | int DoPerturbation;
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| 79 | int DoWannier;
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| 80 | } Switches;
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| 81 |
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| 82 | /*
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| 83 | * Contains parameters regarding localization of orbitals or magnetic perturbation
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| 84 | */
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[97b825] | 85 | class StructLocalizedOrbitals {
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| 86 | public:
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| 87 | StructLocalizedOrbitals();
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| 88 | ~StructLocalizedOrbitals();
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| 89 |
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[43dad6] | 90 | int CommonWannier;
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| 91 | double SawtoothStart;
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| 92 | int VectorPlane;
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| 93 | double VectorCut;
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| 94 | int UseAddGramSch;
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| 95 | int Seed;
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| 96 | double EpsWannier;
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| 97 | } LocalizedOrbitals;
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| 98 |
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| 99 | /*
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| 100 | * Contains all step count and other epsilon threshold parameters
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| 101 | */
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[97b825] | 102 | class StructStepCounts {
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| 103 | public:
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| 104 | StructStepCounts();
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| 105 | ~StructStepCounts();
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| 106 |
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[43dad6] | 107 | int MaxMinStopStep;
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| 108 | int InitMaxMinStopStep;
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| 109 |
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| 110 | int OutVisStep;
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| 111 | int OutSrcStep;
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| 112 | int MaxPsiStep;
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| 113 |
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| 114 | int MaxOuterStep;
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| 115 |
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| 116 | int MaxMinStep;
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| 117 | double RelEpsTotalEnergy;
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| 118 | double RelEpsKineticEnergy;
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| 119 | int MaxMinGapStopStep;
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| 120 | int MaxInitMinStep;
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| 121 | double InitRelEpsTotalEnergy;
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| 122 | double InitRelEpsKineticEnergy;
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| 123 | int InitMaxMinGapStopStep;
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| 124 | } StepCounts;
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| 125 |
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| 126 | /*
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| 127 | * Contains all parameters specific to the plane wave basis set
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| 128 | */
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[97b825] | 129 | class StructPlaneWaveSpecifics {
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| 130 | public:
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| 131 | StructPlaneWaveSpecifics();
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| 132 | ~StructPlaneWaveSpecifics();
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| 133 |
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[43dad6] | 134 | int PsiType;
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| 135 | int MaxPsiDouble;
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| 136 | int PsiMaxNoUp;
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| 137 | int PsiMaxNoDown;
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| 138 | double ECut;
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| 139 | int MaxLevel;
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| 140 | int RiemannTensor;
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| 141 | int LevRFactor;
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| 142 | int RiemannLevel;
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| 143 | int Lev0Factor;
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| 144 | int RTActualUse;
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| 145 | int AddPsis;
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| 146 | double RCut;
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| 147 | } PlaneWaveSpecifics;
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| 148 |
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| 149 | bool FastParsing;
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| 150 |
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| 151 | double Deltat;
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| 152 | int IsAngstroem;
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| 153 | int RelativeCoord;
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| 154 | int StructOpt;
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| 155 | int MaxTypes;
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| 156 | string basis;
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| 157 | };
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| 158 |
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| 159 | #endif /* PCPPARSER_HPP_ */
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