source: src/Parser/MpqcParser_Parameters.cpp@ 36bb2d

Action_Thermostats Add_AtomRandomPerturbation Add_FitFragmentPartialChargesAction Add_RotateAroundBondAction Add_SelectAtomByNameAction Added_ParseSaveFragmentResults AddingActions_SaveParseParticleParameters Adding_Graph_to_ChangeBondActions Adding_MD_integration_tests Adding_ParticleName_to_Atom Adding_StructOpt_integration_tests AtomFragments Automaking_mpqc_open AutomationFragmentation_failures Candidate_v1.5.4 Candidate_v1.6.0 Candidate_v1.6.1 ChangeBugEmailaddress ChangingTestPorts ChemicalSpaceEvaluator CombiningParticlePotentialParsing Combining_Subpackages Debian_Package_split Debian_package_split_molecuildergui_only Disabling_MemDebug Docu_Python_wait EmpiricalPotential_contain_HomologyGraph EmpiricalPotential_contain_HomologyGraph_documentation Enable_parallel_make_install Enhance_userguide Enhanced_StructuralOptimization Enhanced_StructuralOptimization_continued Example_ManyWaysToTranslateAtom Exclude_Hydrogens_annealWithBondGraph FitPartialCharges_GlobalError Fix_BoundInBox_CenterInBox_MoleculeActions Fix_ChargeSampling_PBC Fix_ChronosMutex Fix_FitPartialCharges Fix_FitPotential_needs_atomicnumbers Fix_ForceAnnealing Fix_IndependentFragmentGrids Fix_ParseParticles Fix_ParseParticles_split_forward_backward_Actions Fix_PopActions Fix_QtFragmentList_sorted_selection Fix_Restrictedkeyset_FragmentMolecule Fix_StatusMsg Fix_StepWorldTime_single_argument Fix_Verbose_Codepatterns Fix_fitting_potentials Fixes ForceAnnealing_goodresults ForceAnnealing_oldresults ForceAnnealing_tocheck ForceAnnealing_with_BondGraph ForceAnnealing_with_BondGraph_continued ForceAnnealing_with_BondGraph_continued_betteresults ForceAnnealing_with_BondGraph_contraction-expansion FragmentAction_writes_AtomFragments FragmentMolecule_checks_bonddegrees GeometryObjects Gui_Fixes Gui_displays_atomic_force_velocity ImplicitCharges IndependentFragmentGrids IndependentFragmentGrids_IndividualZeroInstances IndependentFragmentGrids_IntegrationTest IndependentFragmentGrids_Sole_NN_Calculation JobMarket_RobustOnKillsSegFaults JobMarket_StableWorkerPool JobMarket_unresolvable_hostname_fix MoreRobust_FragmentAutomation ODR_violation_mpqc_open PartialCharges_OrthogonalSummation PdbParser_setsAtomName PythonUI_with_named_parameters QtGui_reactivate_TimeChanged_changes Recreated_GuiChecks Rewrite_FitPartialCharges RotateToPrincipalAxisSystem_UndoRedo SaturateAtoms_findBestMatching SaturateAtoms_singleDegree StoppableMakroAction Subpackage_CodePatterns Subpackage_JobMarket Subpackage_LinearAlgebra Subpackage_levmar Subpackage_mpqc_open Subpackage_vmg Switchable_LogView ThirdParty_MPQC_rebuilt_buildsystem TrajectoryDependenant_MaxOrder TremoloParser_IncreasedPrecision TremoloParser_MultipleTimesteps TremoloParser_setsAtomName Ubuntu_1604_changes stable
Last change on this file since 36bb2d was 94d5ac6, checked in by Frederik Heber <heber@…>, 12 years ago

FIX: As we use GSL internally, we are as of now required to use GPL v2 license.

  • GNU Scientific Library is used at every place in the code, especially the sub-package LinearAlgebra is based on it which in turn is used really everywhere in the remainder of MoleCuilder. Hence, we have to use the GPL license for the whole of MoleCuilder. In effect, GPL's COPYING was present all along and stated the terms of the GPL v2 license.
  • Hence, I added the default GPL v2 disclaimer to every source file and removed the note about a (actually missing) LICENSE file.
  • also, I added a help-redistribute action which again gives the disclaimer of the GPL v2.
  • also, I changed in the disclaimer that is printed at every program start in builder_init.cpp.
  • TEST: Added check on GPL statement present in every module to test CodeChecks project-disclaimer.
  • Property mode set to 100644
File size: 5.9 KB
Line 
1/*
2 * Project: MoleCuilder
3 * Description: creates and alters molecular systems
4 * Copyright (C) 2010-2012 University of Bonn. All rights reserved.
5 *
6 *
7 * This file is part of MoleCuilder.
8 *
9 * MoleCuilder is free software: you can redistribute it and/or modify
10 * it under the terms of the GNU General Public License as published by
11 * the Free Software Foundation, either version 2 of the License, or
12 * (at your option) any later version.
13 *
14 * MoleCuilder is distributed in the hope that it will be useful,
15 * but WITHOUT ANY WARRANTY; without even the implied warranty of
16 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
17 * GNU General Public License for more details.
18 *
19 * You should have received a copy of the GNU General Public License
20 * along with MoleCuilder. If not, see <http://www.gnu.org/licenses/>.
21 */
22
23/*
24 * MpqcParser_Parameters.cpp
25 *
26 * Created on: Feb 3, 2011
27 * Author: heber
28 */
29
30// include config.h
31#ifdef HAVE_CONFIG_H
32#include <config.h>
33#endif
34
35#include "CodePatterns/MemDebug.hpp"
36
37#include <string>
38
39#include "CodePatterns/Log.hpp"
40
41#include "MpqcParser.hpp"
42#include "MpqcParser_Parameters.hpp"
43
44#include "Parameters/Parameter.hpp"
45
46template <>
47const std::string Value<bool>::getAsString() const throw(ParameterValueException)
48{
49 if(!ValueSet)
50 throw ParameterValueException();
51 if (value)
52 return std::string("yes");
53 else
54 return std::string("no");
55}
56
57template <>
58void Value<bool>::setAsString(const std::string _value) throw(ParameterException)
59{
60 if (_value == std::string("yes")) {
61 set(true);
62 } else if (_value == std::string("no")) {
63 set(false);
64 } else {
65 throw ParameterValueException();
66 }
67}
68
69
70MpqcParser_Parameters::MpqcParser_Parameters()
71{
72 Init();
73}
74
75void MpqcParser_Parameters::Init()
76{
77 // add all known basis
78 initBasis();
79
80 // add all parameter names
81 {
82 ParamNames.clear();
83 ParamNames.resize(unknownParam);
84 ParamNames[hessianParam] = "Hessian";
85 ParamNames[savestateParam] = "savestate";
86 ParamNames[do_gradientParam] = "do_gradient";
87 ParamNames[maxiterParam] = "maxiter";
88 ParamNames[memoryParam] = "memory";
89 ParamNames[stdapproxParam] = "stdapprox";
90 ParamNames[nfzcParam] = "nfzc";
91 ParamNames[basisParam] = "basis";
92 ParamNames[aux_basisParam] = "aux_basis";
93 ParamNames[integrationParam] = "integration";
94 ParamNames[theoryParam] = "theory";
95 }
96
97 // create theory parameter
98 {
99 ValidTheories.clear();
100 ValidTheories.resize(unknownTheory);
101 ValidTheories[CLHF]="CLHF";
102 ValidTheories[CLKS]="CLKS";
103 ValidTheories[MBPT2]="MBPT2";
104 ValidTheories[MBPT2_R12]="MBPT2_R12";
105 appendParameter(
106 new Parameter<std::string>(
107 ParamNames[theoryParam],
108 ValidTheories,
109 ValidTheories[MBPT2]));
110 }
111 //InvertMap<TheoryNamesType,TheoryLookupType>(TheoryNames,TheoryLookup);
112
113 // create integration parameter
114 {
115 ValidIntegrationMethods.clear();
116 ValidIntegrationMethods.resize(unknownIntegration);
117 ValidIntegrationMethods[IntegralCints] = "IntegralCints";
118 appendParameter(
119 new Parameter<std::string>(
120 ParamNames[integrationParam],
121 ValidIntegrationMethods,
122 ValidIntegrationMethods[IntegralCints]));
123 }
124
125 // add all continuous parameters
126 {
127 appendParameter(new Parameter<bool>(ParamNames[hessianParam], false));
128 appendParameter(new Parameter<bool>(ParamNames[savestateParam], false));
129 appendParameter(new Parameter<bool>(ParamNames[do_gradientParam], true));
130 appendParameter(new Parameter<int>(ParamNames[maxiterParam], 1000));
131 appendParameter(new Parameter<int>(ParamNames[memoryParam], 16000000));
132 appendParameter(new Parameter<std::string>(ParamNames[stdapproxParam], "A'"));
133 appendParameter(new Parameter<int>(ParamNames[nfzcParam], 1));
134 appendParameter(new Parameter<std::string>(ParamNames[basisParam], "3-21G"));
135 appendParameter(new Parameter<std::string>(ParamNames[aux_basisParam], "aug-cc-pVDZ"));
136 }
137}
138
139MpqcParser_Parameters::~MpqcParser_Parameters()
140{}
141
142/** Getter for a specific Parameter.
143 *
144 * @param param index among enum Parameters
145 * @return value of the desired Parameters
146 */
147const std::string MpqcParser_Parameters::getParameter(const enum Parameters param) const
148{
149 return FormatParser_Parameters::getParameter(ParamNames[param])->getAsString();
150}
151
152/** Setter for a specific Parameter.
153 *
154 * @param param index among enum Parameters
155 * @param _value value to set desired Parameter to
156 */
157void MpqcParser_Parameters::setParameter(const enum Parameters param, const std::string &_value)
158{
159 const std::string &name = getParameterName(param);
160 FormatParser_Parameters::getParameter(name)->setAsString(_value);
161}
162
163/** Getter for name of a specific Parameter.
164 *
165 * @param param index among enum Parameters
166 * @return name of the desired Parameter
167 */
168const std::string &MpqcParser_Parameters::getParameterName(const enum Parameters param) const
169{
170 return ParamNames[param];
171}
172
173/** Getter for name of a specific Parameter.
174 *
175 * @param param index among enum Theory
176 * @return name of the desired Theory
177 */
178const std::string &MpqcParser_Parameters::getTheoryName(const enum Theory theory) const
179{
180 return ValidTheories[theory];
181}
182
183/** Getter for the name of specific of IntegrationMethod.
184 *
185 * @param param index among enum IntegrationMethod
186 * @return value of the desired IntegrationMethod
187 */
188const std::string &MpqcParser_Parameters::getIntegrationMethodName(const enum IntegrationMethod integration) const
189{
190 return ValidIntegrationMethods[integration];
191}
192
193/** Checks whether all elements in the world also have parameters in the basis.
194 *
195 * @return true - all elements parametrized, false - at least one element is missing.
196 */
197bool MpqcParser_Parameters::checkWorldElementsAgainstCurrentBasis() const
198{
199 ELOG(0, "MpqcParser_Parameters::checkWorldElementsAgainstCurrentBasis() - not implemented yet.");
200
201 return false;
202}
203
Note: See TracBrowser for help on using the repository browser.