| [61d69a4] | 1 | /*
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 | 2 |  * Project: MoleCuilder
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 | 3 |  * Description: creates and alters molecular systems
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 | 4 |  * Copyright (C)  2010 University of Bonn. All rights reserved.
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 | 5 |  * Please see the LICENSE file or "Copyright notice" in builder.cpp for details.
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 | 6 |  */
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 | 7 | 
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 | 8 | /*
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 | 9 |  * MpqcParser_Parameters.cpp
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 | 10 |  *
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 | 11 |  *  Created on: Feb 3, 2011
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 | 12 |  *      Author: heber
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 | 13 |  */
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 | 14 | 
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 | 15 | // include config.h
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 | 16 | #ifdef HAVE_CONFIG_H
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 | 17 | #include <config.h>
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 | 18 | #endif
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 | 19 | 
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 | 20 | #include <iostream>
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 | 21 | #include <boost/tokenizer.hpp>
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 | 22 | #include <string>
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 | 23 | 
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 | 24 | #include "CodePatterns/MemDebug.hpp"
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 | 25 | 
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 | 26 | #include "CodePatterns/Log.hpp"
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 | 27 | #include "CodePatterns/Verbose.hpp"
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 | 28 | 
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 | 29 | #include "MpqcParser.hpp"
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 | 30 | 
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 | 31 | #include "MpqcParser_Parameters.hpp"
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 | 32 | 
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 | 33 | 
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 | 34 | using boost::any_cast;
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 | 35 | 
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 | 36 | MpqcParser_Parameters::MpqcParser_Parameters()
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 | 37 | {
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 | 38 |   // add all known basis
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 | 39 |   initBasis();
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 | 40 | 
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 | 41 |   // add all theory names
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 | 42 |   TheoryNames[CLHF]="CLHF";
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 | 43 |   TheoryNames[CLKS]="CLKS";
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 | 44 |   TheoryNames[MBPT2]="MBPT2";
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 | 45 |   TheoryNames[MBPT2_R12]="MBPT2_R12";
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 | 46 | 
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| [44fce5] | 47 |   {
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 | 48 |     // TODO: throw exception instead of eLog()
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 | 49 |     std::pair<TheoryLookupType::iterator, bool> inserter;
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 | 50 |     for (TheoryNamesType::iterator iter = TheoryNames.begin();
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 | 51 |         iter != TheoryNames.end();
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 | 52 |         ++iter) {
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 | 53 |       inserter = TheoryLookup.insert( make_pair(iter->second, iter->first) );
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 | 54 |       if (!inserter.second)
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 | 55 |         DoeLog(0) && (eLog() << Verbose(0)
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 | 56 |             << "MpqcParser_Parameters::MpqcParser_Parameters() - Theory name already present: "
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 | 57 |             << (inserter.first)->second << " and " << iter->first << "!"
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 | 58 |             << std::endl);
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 | 59 |     }
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 | 60 |   }
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 | 61 | 
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| [61d69a4] | 62 |   // add all integration names
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 | 63 |   IntegrationNames[IntegralCints] = "IntegralCints";
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| [44fce5] | 64 |   {
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 | 65 |     // TODO: throw exception instead of eLog()
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 | 66 |     std::pair<IntegrationLookupType::iterator, bool> inserter;
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 | 67 |     for (IntegrationNamesType::iterator iter = IntegrationNames.begin();
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 | 68 |         iter != IntegrationNames.end();
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 | 69 |         ++iter) {
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 | 70 |       inserter = IntegrationLookup.insert( make_pair(iter->second, iter->first) );
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 | 71 |       if (!inserter.second)
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 | 72 |         DoeLog(0) && (eLog() << Verbose(0)
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 | 73 |             << "MpqcParser_Parameters::MpqcParser_Parameters() - Integration name already present: "
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 | 74 |             << (inserter.first)->second << " and " << iter->first << "!"
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 | 75 |             << std::endl);
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 | 76 |     }
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 | 77 |   }
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| [61d69a4] | 78 | 
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 | 79 |   // have names for all parmaters
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| [44fce5] | 80 |   ParamNames[hessianParam] = "Hessian";
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| [61d69a4] | 81 |   ParamNames[savestateParam] = "savestate";
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 | 82 |   ParamNames[do_gradientParam] = "do_gradient";
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 | 83 |   ParamNames[maxiterParam] = "maxiter";
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 | 84 |   ParamNames[memoryParam] = "memory";
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 | 85 |   ParamNames[stdapproxParam] = "stdapprox";
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 | 86 |   ParamNames[nfzcParam] = "nfzc";
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 | 87 |   ParamNames[basisParam] = "basis";
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 | 88 |   ParamNames[aux_basisParam] = "aux_basis";
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 | 89 |   ParamNames[integrationParam] = "integration";
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 | 90 |   ParamNames[theoryParam] = "theory";
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 | 91 | 
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| [44fce5] | 92 |   {
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 | 93 |     // TODO: throw exception instead of eLog()
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 | 94 |     std::pair<ParamLookupType::iterator, bool> inserter;
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 | 95 |     for (ParamNamesType::iterator iter = ParamNames.begin();
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 | 96 |         iter != ParamNames.end();
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 | 97 |         ++iter) {
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 | 98 |       inserter = ParamLookup.insert( make_pair(iter->second, iter->first) );
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 | 99 |       if (!inserter.second)
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 | 100 |         DoeLog(0) && (eLog() << Verbose(0)
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 | 101 |             << "MpqcParser_Parameters::MpqcParser_Parameters() - parameter name already present: "
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 | 102 |             << (inserter.first)->second << " and " << iter->first << "!"
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 | 103 |             << std::endl);
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 | 104 |     }
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 | 105 |   }
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 | 106 | 
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| [61d69a4] | 107 |   initParameters();
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 | 108 | }
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 | 109 | 
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 | 110 | void MpqcParser_Parameters::initParameters()
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 | 111 | {
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| [44fce5] | 112 |         appendParameter(hessianParam, bool(false));
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| [61d69a4] | 113 |         appendParameter(savestateParam, bool(false));
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 | 114 |         appendParameter(do_gradientParam, bool(true));
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 | 115 |         appendParameter(maxiterParam, int(1000));
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 | 116 |         appendParameter(memoryParam, int(16000000));
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 | 117 |         appendParameter(stdapproxParam, std::string("A'"));
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 | 118 |         appendParameter(nfzcParam, int(1));
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 | 119 |         appendParameter(basisParam, std::string("3-21G"));
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 | 120 |         appendParameter(aux_basisParam, std::string("aug-cc-pVDZ"));
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 | 121 |         appendParameter(integrationParam, IntegralCints);
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 | 122 |         appendParameter(theoryParam, MBPT2);
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 | 123 | }
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 | 124 | 
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 | 125 | MpqcParser_Parameters::~MpqcParser_Parameters()
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 | 126 | {}
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 | 127 | 
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| [963321a] | 128 | std::ostream & operator << (std::ostream& ost, MpqcParser_Parameters const &_mpqc_params)
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| [61d69a4] | 129 | {
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| [963321a] | 130 |   // this is ugly, but with boost::any to safeguard const-ness is plain impossible
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 | 131 |   MpqcParser_Parameters &mpqc_params = const_cast<MpqcParser_Parameters &>(_mpqc_params);
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| [61d69a4] | 132 |   std::ostringstream output;
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| [963321a] | 133 |   output << "Hessian=" << mpqc_params.getBool(MpqcParser_Parameters::hessianParam) << ";";
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 | 134 |   output << "savestate=" << mpqc_params.getBool(MpqcParser_Parameters::savestateParam) << ";";
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 | 135 |   output << "do_gradient=" << mpqc_params.getBool(MpqcParser_Parameters::do_gradientParam) << ";";
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 | 136 |   output << "maxiter=" << mpqc_params.getInt(MpqcParser_Parameters::maxiterParam) << ";";
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 | 137 |   output << "memory=" << mpqc_params.getInt(MpqcParser_Parameters::memoryParam) << ";";
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| [61d69a4] | 138 |   output << "stdapprox=" << mpqc_params.getString(MpqcParser_Parameters::stdapproxParam) << ";";
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| [963321a] | 139 |   output << "nfzc=" << mpqc_params.getInt(MpqcParser_Parameters::nfzcParam) << ";";
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| [61d69a4] | 140 |   output << "basis=" << mpqc_params.getString(MpqcParser_Parameters::basisParam) << ";";
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 | 141 |   output << "aux_basis=" << mpqc_params.getString(MpqcParser_Parameters::aux_basisParam) << ";";
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 | 142 |   output << "integration=" << mpqc_params.getString(MpqcParser_Parameters::integrationParam) << ";";
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 | 143 |   output << "theory=" << mpqc_params.getString(MpqcParser_Parameters::theoryParam) << ";";
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 | 144 |   ost << output.str();
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 | 145 |   return ost;
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 | 146 | }
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 | 147 | 
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 | 148 | std::istream & operator >> (std::istream& ist, MpqcParser_Parameters ¶ms)
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 | 149 | {
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 | 150 |   typedef boost::tokenizer<boost::char_separator<char> >
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 | 151 |       tokenizer;
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 | 152 |   boost::char_separator<char> semicolonsep(";");
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| [44fce5] | 153 |   boost::char_separator<char> equalitysep(" =");
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| [311da7b] | 154 |   boost::char_separator<char> ticksep("\"");
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| [61d69a4] | 155 |   std::string line;
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 | 156 |   std::getline( ist, line );
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 | 157 |   //DoLog(0) && (Log() << Verbose(0) << "INFO: full line of parameters is '" << line << "'" << std::endl);
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 | 158 |   tokenizer tokens(line, semicolonsep);
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 | 159 |   ASSERT(tokens.begin() != tokens.end(),
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| [311da7b] | 160 |       "operator<< on MpqcParser_Parameters - empty string, need at least ';' in line "+line+"!");
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| [61d69a4] | 161 |   for (tokenizer::iterator tok_iter = tokens.begin();
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 | 162 |         tok_iter != tokens.end(); ++tok_iter) {
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 | 163 |     tokenizer paramtokens(*tok_iter, equalitysep);
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 | 164 |     if (paramtokens.begin() != paramtokens.end()) {
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 | 165 |       tokenizer::iterator tok_paramiter = paramtokens.begin();
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 | 166 |       tokenizer::iterator tok_valueiter = tok_paramiter;
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 | 167 |       tokenizer::iterator tok_checkiter = ++tok_valueiter;
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 | 168 |       ++tok_checkiter;
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| [311da7b] | 169 |       // TODO: throw exception instead of ASSERT
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 | 170 |       ASSERT(tok_paramiter != paramtokens.end(),
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 | 171 |           "operator<< on MpqcParser_Parameters - missing value before ' =' in token "+*tok_iter+"!");
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 | 172 |       ASSERT(tok_valueiter != paramtokens.end(),
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 | 173 |           "operator<< on MpqcParser_Parameters - missing value after ' =' in token "+*tok_iter+"!");
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 | 174 |       ASSERT(tok_checkiter == paramtokens.end(),
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 | 175 |           "operator<< on MpqcParser_Parameters - still more tokens after ' =' in token "+*tok_iter+":"
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 | 176 |           +*tok_checkiter+"!");
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 | 177 |       std::stringstream keystream(*tok_paramiter);
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 | 178 |       std::string key;
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 | 179 |       keystream >> ws >> key;
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 | 180 |       tokenizer ticklesstokens(*tok_valueiter, ticksep);
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 | 181 |       ASSERT(ticklesstokens.begin() != ticklesstokens.end(),
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 | 182 |           "operator<< on MpqcParser_Parameters - no tokens present after removing ticks in token "+*tok_valueiter+"!");
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 | 183 |       std::stringstream valuestream(*(ticklesstokens.begin()));
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 | 184 |       DoLog(2) && (Log() << Verbose(2)
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 | 185 |           << "INFO: Token pair is " << key << "," << valuestream.str() << std::endl);
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| [61d69a4] | 186 | 
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| [44fce5] | 187 |       // TODO: throw exception instead of DoeLog()
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| [311da7b] | 188 |       ASSERT(params.haveParam(key),
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 | 189 |           "operator >> on MpqcParser_Parameters - unknown parameter name '"
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 | 190 |           +key+"' with value "+valuestream.str()+"!");
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 | 191 |       if (params.haveParam(key))
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 | 192 |         params.setter(params.getParam(key), valuestream);
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| [61d69a4] | 193 |     } else {
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 | 194 |       ist.setstate(std::ios::eofbit);
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 | 195 |     }
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 | 196 |   }
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 | 197 |   return ist;
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 | 198 | }
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 | 199 | 
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 | 200 | 
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| [44fce5] | 201 | /** Sets a desired value in the params from a string.
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 | 202 |  *
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 | 203 |  * This is due to strict typing of C++ very ugly and boost::any does not make
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 | 204 |  * it any better because it offers to functions to use values directly from
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 | 205 |  * stringstream. Probably, because value is unknown to is as well and hence
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 | 206 |  * the author could not implement it beautifully, so he dropped it altogether.
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 | 207 |  * Grrr ....
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 | 208 |  *
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 | 209 |  * @param _param param to set
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 | 210 |  * @param _desired stringstream containing value as next argument
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 | 211 |  * @return true - type ok, false - unknown type in params.
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| [61d69a4] | 212 |  */
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| [44fce5] | 213 | bool MpqcParser_Parameters::setter(enum Parameters _param, std::stringstream& _desired) {
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 | 214 |   if (_param == integrationParam) {
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 | 215 |      std::string tmp;
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 | 216 |     _desired >> tmp;
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 | 217 |     params[_param] = IntegrationLookup[tmp];
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 | 218 |   } else if(_param == theoryParam) {
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 | 219 |     std::string tmp;
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 | 220 |     _desired >> tmp;
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 | 221 |     params[_param] = TheoryLookup[tmp];
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 | 222 |   } else if (params[_param].type() == typeid(std::string)) {
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 | 223 |     std::string tmp;
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 | 224 |     _desired >> tmp;
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 | 225 |     params[_param] = tmp;
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 | 226 |   } else if (params[_param].type() ==  typeid(int)) {
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 | 227 |     int tmp;
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 | 228 |     _desired >> tmp;
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 | 229 |     params[_param] = tmp;
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 | 230 |   } else if (params[_param].type() == typeid(double)) {
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 | 231 |     double tmp;
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 | 232 |     _desired >> tmp;
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 | 233 |     params[_param] = tmp;
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 | 234 |   } else if (params[_param].type() == typeid(bool)) {
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 | 235 |     std::string tmp;
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 | 236 |     _desired >> tmp;
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 | 237 |     if (tmp == "yes") {
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 | 238 |       params[_param] = bool(true);
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 | 239 |     } else if (tmp == "no") {
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 | 240 |       params[_param] = bool(false);
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 | 241 |     } else {
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 | 242 |       DoeLog(0) && (eLog() << Verbose(0)
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 | 243 |           << "MpqcParser_Parameters::setter() - unknown boolean key "
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 | 244 |           << tmp << "!" << std::endl);
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 | 245 |     }
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 | 246 |   } else {
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| [61d69a4] | 247 |     DoeLog(0) && (eLog() << Verbose(0)
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| [44fce5] | 248 |         << "MpqcParser_Parameters::setter() - unknown type!" << std::endl);
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 | 249 |     return false;
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| [61d69a4] | 250 |   }
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| [44fce5] | 251 |   return true;
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| [61d69a4] | 252 | }
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 | 253 | 
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| [44fce5] | 254 | 
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| [61d69a4] | 255 | void MpqcParser_Parameters::setTheory(enum Theory _theory)
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 | 256 | {
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| [44fce5] | 257 |   // TODO: throw exception instead of eLog()
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| [311da7b] | 258 | //  try {
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| [61d69a4] | 259 |     params[theoryParam] = _theory;
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| [311da7b] | 260 | //  } catch(const boost::bad_any_cast &) {
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 | 261 | //    DoeLog(0) && (eLog() << Verbose(0)
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 | 262 | //        << "MpqcParser_Parameters::setTheory() - could not set boolean!" << std::endl);
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 | 263 | //  }
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| [44fce5] | 264 | }
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 | 265 | 
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 | 266 | void MpqcParser_Parameters::setIntegration(enum MpqcParser_Parameters::IntegrationMethod _integration){
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 | 267 |   // TODO: throw exception instead of eLog()
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| [311da7b] | 268 | //  try {
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| [44fce5] | 269 |     params[integrationParam] = _integration;
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| [311da7b] | 270 | //  } catch(const boost::bad_any_cast &) {
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 | 271 | //    DoeLog(0) && (eLog() << Verbose(0)
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 | 272 | //        << "MpqcParser_Parameters::setIntegration() - could not set boolean!" << std::endl);
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 | 273 | //  }
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| [61d69a4] | 274 | }
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 | 275 | 
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| [44fce5] | 276 | bool MpqcParser_Parameters::haveParam(std::string _name) const
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 | 277 | {
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 | 278 |   return ParamLookup.count(_name) != 0;
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 | 279 | }
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 | 280 | 
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 | 281 | enum MpqcParser_Parameters::Parameters MpqcParser_Parameters::getParam(std::string _name)
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 | 282 | {
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 | 283 |   return ParamLookup[_name];
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 | 284 | }
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 | 285 | 
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| [61d69a4] | 286 | enum MpqcParser_Parameters::IntegrationMethod MpqcParser_Parameters::getIntegration()
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 | 287 | {
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 | 288 |   enum IntegrationMethod value;
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| [44fce5] | 289 |   // TODO: throw exception instead of eLog()
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| [311da7b] | 290 | //  try {
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| [61d69a4] | 291 |     value = boost::any_cast<enum IntegrationMethod>(params[integrationParam]);
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| [311da7b] | 292 | //  } catch(const boost::bad_any_cast &) {
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 | 293 | //    DoeLog(0) && (eLog() << Verbose(0)
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 | 294 | //        << "MpqcParser_Parameters::getIntegration() - could not convert "
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 | 295 | //        +ParamNames[integrationParam]+" to enum IntegrationMethod!" << std::endl);
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 | 296 | //  }
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| [61d69a4] | 297 |   return value;
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 | 298 | }
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 | 299 | 
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 | 300 | enum MpqcParser_Parameters::Theory MpqcParser_Parameters::getTheory()
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 | 301 | {
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 | 302 |   enum Theory value;
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| [44fce5] | 303 |   // TODO: throw exception instead of eLog()
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| [311da7b] | 304 | //  try {
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| [61d69a4] | 305 |     value = boost::any_cast<enum Theory>(params[theoryParam]);
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| [311da7b] | 306 | //  } catch(const boost::bad_any_cast &) {
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 | 307 | //    DoeLog(0) && (eLog() << Verbose(0)
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 | 308 | //        << "MpqcParser_Parameters::getTheory() - could not convert "
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 | 309 | //        +ParamNames[theoryParam]+" to enum Theory!" << std::endl);
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 | 310 | //  }
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| [61d69a4] | 311 |   return value;
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 | 312 | }
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 | 313 | 
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 | 314 | std::string MpqcParser_Parameters::getString(enum Parameters _param)
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 | 315 | {
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 | 316 |   std::string value;
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 | 317 |   enum IntegrationMethod Iindex;
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 | 318 |   enum Theory Tindex;
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 | 319 |   bool test;
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 | 320 |   switch (_param) {
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| [44fce5] | 321 |     case hessianParam:
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| [61d69a4] | 322 |     case savestateParam:
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 | 323 |     case do_gradientParam:
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 | 324 |       test = boost::any_cast<bool>(params[_param]);
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 | 325 |       if (test)
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 | 326 |         value = "yes";
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 | 327 |       else
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 | 328 |         value = "no";
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 | 329 |       break;
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 | 330 |     case integrationParam:
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| [44fce5] | 331 |       // TODO: throw exception instead of eLog()
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| [311da7b] | 332 | //      try {
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| [61d69a4] | 333 |         Iindex = boost::any_cast<enum IntegrationMethod>(params[_param]);
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| [311da7b] | 334 | //      } catch(const boost::bad_any_cast &) {
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 | 335 | //        DoeLog(0) && (eLog() << Verbose(0)
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 | 336 | //            << "MpqcParser_Parameters::getString() - could not convert "
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 | 337 | //            +ParamNames[_param]+" to string!" << std::endl);
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 | 338 | //      }
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| [61d69a4] | 339 |       value = IntegrationNames[Iindex];
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 | 340 |       break;
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 | 341 |     case theoryParam:
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| [44fce5] | 342 |       // TODO: throw exception instead of eLog()
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| [311da7b] | 343 | //      try {
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| [61d69a4] | 344 |         Tindex = boost::any_cast<enum Theory>(params[_param]);
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| [311da7b] | 345 | //      } catch(const boost::bad_any_cast &) {
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 | 346 | //        DoeLog(0) && (eLog() << Verbose(0)
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 | 347 | //            << "MpqcParser_Parameters::getString() - could not convert "
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 | 348 | //            +ParamNames[_param]+" to string!" << std::endl);
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 | 349 | //      }
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| [61d69a4] | 350 |       value = TheoryNames[(enum Theory)Tindex];
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 | 351 |       break;
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 | 352 |     default:
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| [44fce5] | 353 |       // TODO: throw exception instead of eLog()
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| [311da7b] | 354 | //      try {
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| [61d69a4] | 355 |         value = boost::any_cast<std::string>(params[_param]);
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| [311da7b] | 356 | //      } catch(const boost::bad_any_cast &) {
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 | 357 | //        DoeLog(0) && (eLog() << Verbose(0)
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 | 358 | //            << "MpqcParser_Parameters::getString() - could not convert "
 | 
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 | 359 | //            +ParamNames[_param]+" to string!" << std::endl);
 | 
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 | 360 | //      }
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| [61d69a4] | 361 |       break;
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 | 362 |   }
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 | 363 | 
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 | 364 |   return value;
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 | 365 | }
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 | 366 | 
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 | 367 | int MpqcParser_Parameters::getInt(enum Parameters _param)
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 | 368 | {
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 | 369 |   int value;
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 | 370 |   switch (_param) {
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 | 371 |     default:
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| [44fce5] | 372 |       // TODO: throw exception instead of eLog()
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| [311da7b] | 373 | //      try {
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| [61d69a4] | 374 |         value = boost::any_cast<int>(params[_param]);
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| [311da7b] | 375 | //      } catch(const boost::bad_any_cast &) {
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 | 376 | //        DoeLog(0) && (eLog() << Verbose(0)
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 | 377 | //            << "MpqcParser_Parameters::getInt() - could not convert "
 | 
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 | 378 | //            +ParamNames[_param]+" to int!" << std::endl);
 | 
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 | 379 | //      }
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| [61d69a4] | 380 |       break;
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 | 381 |   }
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 | 382 |   return value;
 | 
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 | 383 | }
 | 
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 | 384 | 
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 | 385 | double MpqcParser_Parameters::getDouble(enum Parameters _param)
 | 
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| [44fce5] | 386 | {
 | 
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| [61d69a4] | 387 |   double value;
 | 
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| [44fce5] | 388 |   // TODO: throw exception instead of eLog()
 | 
|---|
| [311da7b] | 389 | //  try {
 | 
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| [61d69a4] | 390 |     value = boost::any_cast<double>(params[_param]);
 | 
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| [311da7b] | 391 | //  } catch(const boost::bad_any_cast &) {
 | 
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 | 392 | //    DoeLog(0) && (eLog() << Verbose(0)
 | 
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 | 393 | //        << "MpqcParser_Parameters::getDouble() - could not convert "
 | 
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 | 394 | //        +ParamNames[_param]+" to double!" << std::endl);
 | 
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 | 395 | //  }
 | 
|---|
| [61d69a4] | 396 |   return value;
 | 
|---|
 | 397 | }
 | 
|---|
 | 398 | 
 | 
|---|
 | 399 | bool MpqcParser_Parameters::getBool(enum Parameters _param)
 | 
|---|
 | 400 | {
 | 
|---|
 | 401 |   bool value;
 | 
|---|
| [44fce5] | 402 |   // TODO: throw exception instead of eLog()
 | 
|---|
| [311da7b] | 403 | //  try {
 | 
|---|
| [61d69a4] | 404 |     value = boost::any_cast<bool>(params[_param]);
 | 
|---|
| [311da7b] | 405 | //  } catch(const boost::bad_any_cast &) {
 | 
|---|
 | 406 | //    DoeLog(0) && (eLog() << Verbose(0)
 | 
|---|
 | 407 | //        << "MpqcParser_Parameters::getBool() - could not convert "
 | 
|---|
 | 408 | //        +ParamNames[_param]+" to bool!" << std::endl);
 | 
|---|
 | 409 | //  }
 | 
|---|
| [61d69a4] | 410 |   return value;
 | 
|---|
 | 411 | }
 | 
|---|
 | 412 | 
 | 
|---|
 | 413 | 
 | 
|---|
 | 414 | /** Checks whether all elements in the world also have parameters in the basis.
 | 
|---|
 | 415 |  *
 | 
|---|
 | 416 |  * @return true - all elements parametrized, false - at least one element is missing.
 | 
|---|
 | 417 |  */
 | 
|---|
 | 418 | bool MpqcParser_Parameters::checkWorldElementsAgainstCurrentBasis() const
 | 
|---|
 | 419 | {
 | 
|---|
 | 420 |   DoeLog(0) && (eLog() << Verbose(0)
 | 
|---|
 | 421 |       << "MpqcParser_Parameters::checkWorldElementsAgainstCurrentBasis() - not implemented yet."
 | 
|---|
 | 422 |       << std::endl);
 | 
|---|
 | 423 | 
 | 
|---|
 | 424 |   return false;
 | 
|---|
 | 425 | }
 | 
|---|
 | 426 | 
 | 
|---|