source: src/Makefile.am@ 1b5a40

Action_Thermostats Add_AtomRandomPerturbation Add_FitFragmentPartialChargesAction Add_RotateAroundBondAction Add_SelectAtomByNameAction Added_ParseSaveFragmentResults AddingActions_SaveParseParticleParameters Adding_Graph_to_ChangeBondActions Adding_MD_integration_tests Adding_ParticleName_to_Atom Adding_StructOpt_integration_tests AtomFragments Automaking_mpqc_open AutomationFragmentation_failures Candidate_v1.5.4 Candidate_v1.6.0 Candidate_v1.6.1 Candidate_v1.7.0 ChangeBugEmailaddress ChangingTestPorts ChemicalSpaceEvaluator CombiningParticlePotentialParsing Combining_Subpackages Debian_Package_split Debian_package_split_molecuildergui_only Disabling_MemDebug Docu_Python_wait EmpiricalPotential_contain_HomologyGraph EmpiricalPotential_contain_HomologyGraph_documentation Enable_parallel_make_install Enhance_userguide Enhanced_StructuralOptimization Enhanced_StructuralOptimization_continued Example_ManyWaysToTranslateAtom Exclude_Hydrogens_annealWithBondGraph FitPartialCharges_GlobalError Fix_BoundInBox_CenterInBox_MoleculeActions Fix_ChargeSampling_PBC Fix_ChronosMutex Fix_FitPartialCharges Fix_FitPotential_needs_atomicnumbers Fix_ForceAnnealing Fix_IndependentFragmentGrids Fix_ParseParticles Fix_ParseParticles_split_forward_backward_Actions Fix_PopActions Fix_QtFragmentList_sorted_selection Fix_Restrictedkeyset_FragmentMolecule Fix_StatusMsg Fix_StepWorldTime_single_argument Fix_Verbose_Codepatterns Fix_fitting_potentials Fixes ForceAnnealing_goodresults ForceAnnealing_oldresults ForceAnnealing_tocheck ForceAnnealing_with_BondGraph ForceAnnealing_with_BondGraph_continued ForceAnnealing_with_BondGraph_continued_betteresults ForceAnnealing_with_BondGraph_contraction-expansion FragmentAction_writes_AtomFragments FragmentMolecule_checks_bonddegrees GeometryObjects Gui_Fixes Gui_displays_atomic_force_velocity ImplicitCharges IndependentFragmentGrids IndependentFragmentGrids_IndividualZeroInstances IndependentFragmentGrids_IntegrationTest IndependentFragmentGrids_Sole_NN_Calculation JobMarket_RobustOnKillsSegFaults JobMarket_StableWorkerPool JobMarket_unresolvable_hostname_fix MoreRobust_FragmentAutomation ODR_violation_mpqc_open PartialCharges_OrthogonalSummation PdbParser_setsAtomName PythonUI_with_named_parameters QtGui_reactivate_TimeChanged_changes Recreated_GuiChecks Rewrite_FitPartialCharges RotateToPrincipalAxisSystem_UndoRedo SaturateAtoms_findBestMatching SaturateAtoms_singleDegree StoppableMakroAction Subpackage_CodePatterns Subpackage_JobMarket Subpackage_LinearAlgebra Subpackage_levmar Subpackage_mpqc_open Subpackage_vmg Switchable_LogView ThirdParty_MPQC_rebuilt_buildsystem TrajectoryDependenant_MaxOrder TremoloParser_IncreasedPrecision TremoloParser_MultipleTimesteps TremoloParser_setsAtomName Ubuntu_1604_changes stable
Last change on this file since 1b5a40 was fbf143, checked in by Frederik Heber <heber@…>, 13 years ago

Placed Containers, Converter, and SetValues as subfolders into Summation.

  • also libMolecuilderFragmentationSummation is now a shared library, easing linkage to libMolecuilderJobs, and contains all of the three convenience libraries.
  • libMolecuilderFragmentationSetValues is now again convenience, as contained in ..Summation which in turn is shared.
  • KeySetsContainer right now is the link between lib..Summation and lib.. Fragmentation. Hence, we had to extract the module and change it into a shared library, as it is required by libMolecuilderJobs through ..Summation but also by ..Fragmentation that heavily relies on this container.
  • moved parseKeySetFile down into Fragmentation folder to KeySetsContainer, it is also contained in new shared library libMolecuilderFragmentation_ KeySetsContainer.
  • Property mode set to 100644
File size: 17.8 KB
Line 
1# PLEASE adhere to the alphabetical ordering in this Makefile!
2# Also indentation by a single tab
3
4MOSTLYCLEANFILES =
5lib_LTLIBRARIES =
6noinst_LTLIBRARIES =
7pyexec_LTLIBRARIES =
8BUILT_SOURCES =
9bin_PROGRAMS =
10EXTRA_DIST =
11
12include Actions/Makefile.am
13include Analysis/Makefile.am
14include Atom/Makefile.am
15include Element/Makefile.am
16include Filling/Makefile.am
17include Fragmentation/Makefile.am
18include Fragmentation/Summation/Containers/Makefile.am
19include Fragmentation/Summation/Converter/Makefile.am
20include Fragmentation/Summation/Makefile.am
21include Fragmentation/Summation/SetValues/Makefile.am
22include FunctionApproximation/Makefile.am
23include Graph/Makefile.am
24include Helpers/Makefile.am
25
26if CONDJOBMARKET
27include Fragmentation/Automation/Makefile.am
28include Jobs/Makefile.am
29endif
30
31include LinkedCell/Makefile.am
32include Parameters/Makefile.am
33include Parser/Makefile.am
34include Potentials/Makefile.am
35include RandomNumbers/Makefile.am
36include Shapes/Makefile.am
37include UIElements/Makefile.am
38
39AM_LDFLAGS = -ldl ${BOOST_LDFLAGS} ${CodePatterns_LDFLAGS}
40AM_CPPFLAGS = ${BOOST_CPPFLAGS} ${CodePatterns_CFLAGS}
41
42BONDSOURCE = \
43 Bond/bond.cpp \
44 Bond/bond_observable.cpp \
45 Bond/BondInfo.cpp \
46 Bond/GraphEdge.cpp
47
48BONDHEADER = \
49 Bond/bond.hpp \
50 Bond/bond_observable.hpp \
51 Bond/BondInfo.hpp \
52 Bond/GraphEdge.hpp
53
54DESCRIPTORSOURCE = \
55 Descriptors/AtomDescriptor.cpp \
56 Descriptors/AtomIdDescriptor.cpp \
57 Descriptors/AtomOfMoleculeDescriptor.cpp \
58 Descriptors/AtomOfMoleculeSelectionDescriptor.cpp \
59 Descriptors/AtomOrderDescriptor.cpp \
60 Descriptors/AtomSelectionDescriptor.cpp \
61 Descriptors/AtomShapeDescriptor.cpp \
62 Descriptors/AtomTypeDescriptor.cpp \
63 Descriptors/AtomsWithinDistanceOfDescriptor.cpp \
64 Descriptors/MoleculeDescriptor.cpp \
65 Descriptors/MoleculeFormulaDescriptor.cpp \
66 Descriptors/MoleculeIdDescriptor.cpp \
67 Descriptors/MoleculeNameDescriptor.cpp \
68 Descriptors/MoleculeOfAtomSelectionDescriptor.cpp \
69 Descriptors/MoleculeOrderDescriptor.cpp \
70 Descriptors/MoleculePtrDescriptor.cpp \
71 Descriptors/MoleculeSelectionDescriptor.cpp
72
73
74DESCRIPTORHEADER = \
75 Descriptors/AtomDescriptor.hpp \
76 Descriptors/AtomIdDescriptor.hpp \
77 Descriptors/AtomOfMoleculeDescriptor.hpp \
78 Descriptors/AtomOfMoleculeSelectionDescriptor.hpp \
79 Descriptors/AtomOrderDescriptor.hpp \
80 Descriptors/AtomSelectionDescriptor.hpp \
81 Descriptors/AtomShapeDescriptor.hpp \
82 Descriptors/AtomTypeDescriptor.hpp \
83 Descriptors/AtomsWithinDistanceOfDescriptor.hpp \
84 Descriptors/DescriptorBase.hpp \
85 Descriptors/MoleculeDescriptor.hpp \
86 Descriptors/MoleculeFormulaDescriptor.hpp \
87 Descriptors/MoleculeIdDescriptor.hpp \
88 Descriptors/MoleculeNameDescriptor.hpp \
89 Descriptors/MoleculeOfAtomSelectionDescriptor.hpp \
90 Descriptors/MoleculeOrderDescriptor.hpp \
91 Descriptors/MoleculePtrDescriptor.hpp \
92 Descriptors/MoleculeSelectionDescriptor.hpp \
93 Descriptors/SelectiveIterator.hpp
94
95DESCRIPTORIMPLHEADER = \
96 Descriptors/AtomDescriptor_impl.hpp \
97 Descriptors/AtomIdDescriptor_impl.hpp \
98 Descriptors/AtomOfMoleculeDescriptor_impl.hpp \
99 Descriptors/AtomOfMoleculeSelectionDescriptor_impl.hpp \
100 Descriptors/AtomOrderDescriptor_impl.hpp \
101 Descriptors/AtomSelectionDescriptor_impl.hpp \
102 Descriptors/AtomShapeDescriptor_impl.hpp \
103 Descriptors/AtomTypeDescriptor_impl.hpp \
104 Descriptors/AtomsWithinDistanceOfDescriptor_impl.hpp \
105 Descriptors/DescriptorBase_impl.hpp \
106 Descriptors/MoleculeDescriptor_impl.hpp \
107 Descriptors/MoleculeFormulaDescriptor_impl.hpp \
108 Descriptors/MoleculeIdDescriptor_impl.hpp \
109 Descriptors/MoleculeNameDescriptor_impl.hpp \
110 Descriptors/MoleculeOfAtomSelectionDescriptor_impl.hpp \
111 Descriptors/MoleculeOrderDescriptor_impl.hpp \
112 Descriptors/MoleculePtrDescriptor_impl.hpp \
113 Descriptors/MoleculeSelectionDescriptor_impl.hpp \
114 Descriptors/SelectiveIterator_impl.hpp
115
116DYNAMICSSOURCE = \
117 Dynamics/MinimiseConstrainedPotential.cpp
118
119DYNAMICSHEADER = \
120 Dynamics/LinearInterpolationBetweenSteps.hpp \
121 Dynamics/MinimiseConstrainedPotential.hpp \
122 Dynamics/OutputTemperature.hpp \
123 Dynamics/VerletForceIntegration.hpp
124
125THERMOSTATSOURCE = \
126 Thermostats/Berendsen.cpp \
127 Thermostats/GaussianThermostat.cpp \
128 Thermostats/Langevin.cpp \
129 Thermostats/NoseHoover.cpp \
130 Thermostats/NoThermostat.cpp \
131 Thermostats/Thermostat.cpp \
132 Thermostats/ThermoStatContainer.cpp \
133 Thermostats/Woodcock.cpp
134
135THERMOSTATHEADER = \
136 Thermostats/Berendsen.hpp \
137 Thermostats/GaussianThermostat.hpp \
138 Thermostats/Langevin.hpp \
139 Thermostats/NoseHoover.hpp \
140 Thermostats/NoThermostat.hpp \
141 Thermostats/Thermostat.hpp \
142 Thermostats/ThermoStatContainer.hpp \
143 Thermostats/Woodcock.hpp
144
145TESSELATIONSOURCE = \
146 Tesselation/ApproximateShapeArea.cpp \
147 Tesselation/ApproximateShapeVolume.cpp \
148 Tesselation/boundary.cpp \
149 Tesselation/BoundaryLineSet.cpp \
150 Tesselation/BoundaryPointSet.cpp \
151 Tesselation/BoundaryPolygonSet.cpp \
152 Tesselation/BoundaryTriangleSet.cpp \
153 Tesselation/CandidateForTesselation.cpp \
154 Tesselation/ellipsoid.cpp \
155 Tesselation/tesselation.cpp \
156 Tesselation/tesselationhelpers.cpp \
157 Tesselation/triangleintersectionlist.cpp
158
159TESSELATIONHEADER = \
160 Tesselation/ApproximateShapeArea.hpp \
161 Tesselation/ApproximateShapeVolume.hpp \
162 Tesselation/boundary.hpp \
163 Tesselation/BoundaryLineSet.hpp \
164 Tesselation/BoundaryMaps.hpp \
165 Tesselation/BoundaryPointSet.hpp \
166 Tesselation/BoundaryPolygonSet.hpp \
167 Tesselation/BoundaryTriangleSet.hpp \
168 Tesselation/CandidateForTesselation.hpp \
169 Tesselation/ellipsoid.hpp \
170 Tesselation/tesselation.hpp \
171 Tesselation/tesselationhelpers.hpp \
172 Tesselation/triangleintersectionlist.hpp
173
174MOLECUILDERSOURCE = \
175 ${BONDSOURCE} \
176 ${DESCRIPTORSOURCE} \
177 ${DYNAMICSSOURCE} \
178 ${THERMOSTATSOURCE} \
179 ${TESSELATIONSOURCE} \
180 AtomIdSet.cpp \
181 Box.cpp \
182 Box_BoundaryConditions.cpp \
183 config.cpp \
184 Formula.cpp \
185 MoleculeLeafClass.cpp \
186 moleculelist.cpp \
187 molecule.cpp \
188 molecule_geometry.cpp \
189 molecule_graph.cpp \
190 UIElements/UIFactory.cpp \
191 version.c \
192 World.cpp \
193 WorldTime.cpp
194
195MOLECUILDERHEADER = \
196 ${BONDHEADER} \
197 ${DESCRIPTORHEADER} \
198 ${DESCRIPTORIMPLHEADER} \
199 ${DYNAMICSHEADER} \
200 ${THERMOSTATHEADER} \
201 ${TESSELATIONHEADER} \
202 AtomIdSet.hpp \
203 Box.hpp \
204 Box_BoundaryConditions.hpp \
205 config.hpp \
206 Formula.hpp \
207 IdPool.hpp \
208 IdPool_impl.hpp \
209 IdPool_policy.hpp \
210 MoleculeLeafClass.hpp \
211 MoleculeListClass.hpp \
212 molecule.hpp \
213 types.hpp \
214 UIElements/UIFactory.hpp \
215 version.h \
216 World.hpp \
217 World_calculations.hpp \
218 WorldTime.hpp
219
220noinst_LTLIBRARIES += libMolecuilder.la
221libMolecuilder_la_includedir = $(includedir)/MoleCuilder/
222
223nobase_libMolecuilder_la_include_HEADERS = ${MOLECUILDERHEADER}
224
225## Define the source file list for the "libexample-@MOLECUILDER_API_VERSION@.la"
226## target. Note that @MOLECUILDER_API_VERSION@ is not interpreted by Automake and
227## will therefore be treated as if it were literally part of the target name,
228## and the variable name derived from that.
229## The file extension .cc is recognized by Automake, and makes it produce
230## rules which invoke the C++ compiler to produce a libtool object file (.lo)
231## from each source file. Note that it is not necessary to list header files
232## which are already listed elsewhere in a _HEADERS variable assignment.
233libMolecuilder_la_SOURCES = ${MOLECUILDERSOURCE}
234
235## Instruct libtool to include ABI version information in the generated shared
236## library file (.so). The library ABI version is defined in configure.ac, so
237## that all version information is kept in one place.
238#libMolecuilder_la_LDFLAGS = -version-info $(MOLECUILDER_SO_VERSION)
239
240## The generated configuration header is installed in its own subdirectory of
241## $(libdir). The reason for this is that the configuration information put
242## into this header file describes the target platform the installed library
243## has been built for. Thus the file must not be installed into a location
244## intended for architecture-independent files, as defined by the Filesystem
245## Hierarchy Standard (FHS).
246## The nodist_ prefix instructs Automake to not generate rules for including
247## the listed files in the distribution on 'make dist'. Files that are listed
248## in _HEADERS variables are normally included in the distribution, but the
249## configuration header file is generated at configure time and should not be
250## shipped with the source tarball.
251libMolecuilder_la_libincludedir = $(libdir)/MoleCuilder/include
252nodist_libMolecuilder_la_libinclude_HEADERS = $(top_builddir)/libmolecuilder_config.h
253
254## Install the generated pkg-config file (.pc) into the expected location for
255## architecture-dependent package configuration information. Occasionally,
256## pkg-config files are also used for architecture-independent data packages,
257## in which case the correct install location would be $(datadir)/pkgconfig.
258pkgconfigdir = $(libdir)/pkgconfig
259pkgconfig_DATA = $(top_builddir)/MoleCuilder.pc
260
261
262INCLUDES = \
263 -I$(top_srcdir)/src/unittests \
264 -I$(top_srcdir)/src/Actions \
265 -I$(top_srcdir)/src/UIElements \
266 -I$(top_srcdir)/LinearAlgebra/src
267
268bin_PROGRAMS += molecuilder joiner analyzer
269EXTRA_PROGRAMS = unity
270
271
272extrastuffdir = $(datadir)/@PACKAGE@/data
273databasedir = $(extrastuffdir)/databases
274database_DATA = \
275 ${top_srcdir}/data/databases/*.db
276
277bondtabledir = $(extrastuffdir)/bondtables
278bondtable_DATA = \
279 ${top_srcdir}/data/bondtables/*.dat
280
281moleculedir = $(extrastuffdir)/molecules
282molecule_DATA = \
283 ${top_srcdir}/data/molecules/*.pdb
284
285if CONDPYTHON
286pyexec_LTLIBRARIES += pyMoleCuilder.la
287pyMoleCuilder_la_SOURCES = \
288 cleanUp.cpp \
289 cleanUp.hpp \
290 Actions/Action_impl_python.hpp \
291 Actions/GlobalListOfActions.hpp \
292 Actions/ActionHistory.hpp \
293 Actions/pyMoleCuilder.cpp
294pyMoleCuilder_la_CPPFLAGS = ${BOOST_CPPFLAGS} ${CodePatterns_CFLAGS} -I$(PYTHON_INCLUDE_DIR)
295pyMoleCuilder_la_LDFLAGS = -module -avoid-version -shared $(BOOST_PYTHON_LDFLAGS)
296pyMoleCuilder_la_LIBADD = \
297 libMolecuilderUI.la
298if CONDJOBMARKET
299pyMoleCuilder_la_LIBADD += \
300 libMolecuilderJobs.la
301endif
302pyMoleCuilder_la_LIBADD += \
303 $(BOOST_PYTHON_LIBS) \
304 ${CodePatterns_LIBS} \
305 -l$(PYTHON_LIB)
306endif
307
308
309molecuilder_CPPFLAGS = $(AM_CPPFLAGS)
310#molecuilder_CPPFLAGS += -DNO_CACHING
311molecuilder_LDFLAGS = \
312 $(AM_LDFLAGS) \
313 $(BOOST_FILESYSTEM_LDFLAGS) \
314 $(BOOST_PROGRAM_OPTIONS_LDFLAGS) \
315 $(BOOST_RANDOM_LDFLAGS) \
316 $(BOOST_SYSTEM_LDFLAGS) \
317 $(BOOST_THREAD_LDFLAGS)
318molecuilder_SOURCES = \
319 builder.cpp \
320 builder_init.cpp \
321 builder_init.hpp \
322 cleanUp.cpp \
323 cleanUp.hpp \
324 PythonScripting.hpp
325molecuilder_LDADD = \
326 libMolecuilderUI.la
327if CONDJOBMARKET
328molecuilder_LDADD += \
329 libMolecuilderJobs.la
330endif
331molecuilder_LDADD += \
332 $(top_builddir)/LinearAlgebra/src/LinearAlgebra/libLinearAlgebra.la \
333 ${CodePatterns_LIBS} \
334 $(BOOST_THREAD_LIBS) \
335 $(BOOST_PROGRAM_OPTIONS_LIBS) \
336 $(BOOST_RANDOM_LIBS) \
337 $(BOOST_FILESYSTEM_LIBS) \
338 $(BOOST_SYSTEM_LIBS)
339
340if CONDPYTHON
341molecuilder_SOURCES += \
342 Actions/Action_impl_python.hpp \
343 Actions/GlobalListOfActions.hpp
344molecuilder_CPPFLAGS += -I$(PYTHON_INCLUDE_DIR)
345molecuilder_LDFLAGS += $(BOOST_PYTHON_LDFLAGS)
346molecuilder_LDADD += \
347 $(BOOST_PYTHON_LIBS) \
348 ${CodePatterns_LIBS} \
349 -l$(PYTHON_LIB)
350endif
351
352#Stuff for building the GUI using Qt
353if CONDQTGUI
354bin_PROGRAMS += molecuildergui
355molecuildergui_SOURCES = \
356 builder.cpp \
357 builder_init.cpp \
358 builder_init.hpp \
359 cleanUp.cpp \
360 cleanUp.hpp \
361 PythonScripting.hpp
362molecuildergui_CPPFLAGS = $(AM_CPPFLAGS) -DUSE_GUI_QT
363molecuildergui_LDFLAGS = \
364 $(AM_LDFLAGS) \
365 $(BOOST_FILESYSTEM_LDFLAGS) \
366 $(BOOST_PROGRAM_OPTIONS_LDFLAGS) \
367 $(BOOST_SYSTEM_LDFLAGS) \
368 $(BOOST_THREAD_LDFLAGS)
369molecuildergui_LDADD = \
370 libMolecuilderQtUI.la \
371 libMolecuilderUI.la
372if CONDJOBMARKET
373molecuildergui_LDADD += \
374 libMolecuilderJobs.la
375endif
376molecuildergui_LDADD += \
377 $(top_builddir)/LinearAlgebra/src/LinearAlgebra/libLinearAlgebra.la \
378 ${CodePatterns_LIBS} \
379 $(BOOST_THREAD_LIBS) \
380 $(BOOST_PROGRAM_OPTIONS_LIBS) \
381 $(BOOST_RANDOM_LIBS) \
382 $(BOOST_FILESYSTEM_LIBS) \
383 $(BOOST_SYSTEM_LIBS) \
384 $(GUI_LIBS)
385
386if CONDPYTHON
387molecuildergui_SOURCES += \
388 Actions/Action_impl_python.hpp \
389 Actions/GlobalListOfActions.hpp
390molecuildergui_CPPFLAGS += -I$(PYTHON_INCLUDE_DIR)
391molecuildergui_LDFLAGS += $(BOOST_PYTHON_LDFLAGS)
392molecuildergui_LDADD += \
393 $(BOOST_PYTHON_LIBS) \
394 ${CodePatterns_LIBS} \
395 -l$(PYTHON_LIB)
396endif
397
398endif
399
400joiner_SOURCES = Fragmentation/joiner.cpp Fragmentation/datacreator.cpp Fragmentation/datacreator.hpp
401joiner_CPPFLAGS = $(AM_CPPFLAGS)
402joiner_LDFLAGS = $(AM_LDFLAGS) $(BOOST_THREAD_LDFLAGS)
403joiner_LDADD = \
404 libMolecuilderFragmentation_getFromKeysetStub.la \
405 libMolecuilderFragmentation.la \
406 libMolecuilderFragmentation_KeysetsContainer.la \
407 libMolecuilderHelpers.la \
408 libMolecuilderElement.la \
409 $(top_builddir)/LinearAlgebra/src/LinearAlgebra/libLinearAlgebra.la \
410 ${CodePatterns_LIBS} \
411 $(BOOST_THREAD_LIBS)
412
413analyzer_SOURCES = Fragmentation/analyzer.cpp Fragmentation/datacreator.cpp Fragmentation/datacreator.hpp
414analyzer_CPPFLAGS = $(AM_CPPFLAGS)
415analyzer_LDFLAGS = $(AM_LDFLAGS) $(BOOST_THREAD_LDFLAGS)
416analyzer_LDADD = \
417 libMolecuilderFragmentation_getFromKeysetStub.la \
418 libMolecuilderFragmentation.la \
419 libMolecuilderFragmentation_KeysetsContainer.la \
420 libMolecuilderHelpers.la \
421 libMolecuilderElement.la \
422 $(top_builddir)/LinearAlgebra/src/LinearAlgebra/libLinearAlgebra.la \
423 ${CodePatterns_LIBS} \
424 $(BOOST_THREAD_LIBS)
425
426if CONDJOBMARKET
427CONTROLLERSOURCE = \
428 controller_MPQCCommandJob.cpp \
429 ControllerOptions_MPQCCommandJob.cpp
430
431CONTROLLERHEADER = \
432 controller_MPQCCommandJob.hpp \
433 ControllerOptions_MPQCCommandJob.hpp
434
435
436noinst_LTLIBRARIES += libFragmentationAutomationController.la
437libFragmentationAutomationController_la_includedir = $(includedir)/MoleCuilder/JobMarket
438nobase_libFragmentationAutomationController_la_include_HEADERS = $(CONTROLLERHEADER)
439libFragmentationAutomationController_la_SOURCES = $(CONTROLLERSOURCE)
440 libFragmentationAutomationController_la_CPPFLAGS = $(AM_CPPFLAGS) $(JobMarket_CFLAGS)
441libFragmentationAutomationController_la_LIBADD = \
442 ${JobMarket_Controller_LIBS} \
443 $(JobMarket_LIBS)
444
445bin_PROGRAMS += Controller PoolWorker Server
446
447Controller_SOURCES = controller.cpp controller_AddOn_MPQCCommandJob.cpp
448Controller_LDFLAGS = $(AM_LDFLAGS) $(BOOST_SERIALIZATION_LDFLAGS) $(BOOST_PROGRAM_OPTIONS_LDFLAGS) ${CodePatterns_LDFLAGS}
449Controller_CPPFLAGS = $(AM_CPPFLAGS) $(JobMarket_CFLAGS)
450Controller_LDADD = \
451 libFragmentationAutomationController.la \
452 libMolecuilderJobs.la \
453 libMolecuilderFragmentationSummation.la \
454 libMolecuilderFragmentation_getFromKeysetStub.la \
455 libMolecuilderFragmentation.la \
456 libMolecuilderHelpers.la \
457 $(JobMarket_Controller_LIBS) \
458 $(top_builddir)/LinearAlgebra/src/LinearAlgebra/libLinearAlgebra.la \
459 $(BOOST_SERIALIZATION_LIBS) \
460 $(BOOST_PROGRAM_OPTIONS_LIBS) \
461 ${CodePatterns_LIBS}
462
463PoolWorker_SOURCES = poolworker.cpp
464PoolWorker_LDFLAGS = $(AM_LDFLAGS) $(BOOST_SERIALIZATION_LDFLAGS) $(BOOST_PROGRAM_OPTIONS_LDFLAGS) ${CodePatterns_LDFLAGS}
465PoolWorker_CPPFLAGS = $(AM_CPPFLAGS) $(JobMarket_CFLAGS)
466PoolWorker_LDADD = \
467 libMolecuilderJobs.la \
468 libMolecuilderFragmentationSummation.la \
469 ${JobMarket_PoolWorker_LIBS} \
470 $(top_builddir)/LinearAlgebra/src/LinearAlgebra/libLinearAlgebra.la \
471 $(BOOST_SERIALIZATION_LIBS) \
472 $(BOOST_PROGRAM_OPTIONS_LIBS) \
473 ${CodePatterns_LIBS}
474
475Server_SOURCES = Server.cpp
476Server_LDFLAGS = $(AM_LDFLAGS) $(BOOST_SERIALIZATION_LDFLAGS) $(BOOST_PROGRAM_OPTIONS_LDFLAGS) ${CodePatterns_LDFLAGS}
477Server_CPPFLAGS = $(AM_CPPFLAGS) $(JobMarket_CFLAGS)
478Server_LDADD = \
479 libMolecuilderJobs.la \
480 libMolecuilderFragmentationSummation.la \
481 ${JobMarket_Server_LIBS} \
482 $(top_builddir)/LinearAlgebra/src/LinearAlgebra/libLinearAlgebra.la \
483 $(BOOST_SERIALIZATION_LIBS) \
484 $(BOOST_PROGRAM_OPTIONS_LIBS) \
485 ${CodePatterns_LIBS}
486endif
487
488if CONDLEVMAR
489bin_PROGRAMS += LevMartester
490LevMartester_SOURCES = LevMartester.cpp
491LevMartester_CPPFLAGS = $(AM_CPPFLAGS) $(LEVMAR_CPPFLAGS)
492LevMartester_LDFLAGS = $(AM_LDFLAGS) $(BOOST_SERIALIZATION_LDFLAGS) $(BOOST_PROGRAM_OPTIONS_LDFLAGS) $(BOOST_FILESYSTEM_LDFLAGS) $(BOOST_SYSTEM_LDFLAGS) ${CodePatterns_LDFLAGS} $(LEVMAR_LDFLAGS)
493LevMartester_LDADD = \
494 libMolecuilderPotentials.la \
495 libMolecuilderFunctionApproximation.la \
496 libMolecuilderFragmentation.la \
497 libMolecuilderFragmentation_getFromKeysetStub.la \
498 libMolecuilderFragmentationSetValues.la \
499 libMolecuilderHelpers.la \
500 $(top_builddir)/LinearAlgebra/src/LinearAlgebra/libLinearAlgebra.la \
501 $(BOOST_SERIALIZATION_LIBS) \
502 $(BOOST_PROGRAM_OPTIONS_LIBS) \
503 $(BOOST_FILESYSTEM_LIBS) \
504 $(BOOST_SYSTEM_LIBS) \
505 ${CodePatterns_LIBS} \
506 $(LEVMAR_LIBS) \
507 $(LAPACK_LIBS) $(BLAS_LIBS) $(LIBS) $(FLIBS)
508endif
509
510unity_SOURCES = unity.cpp
511unity_CPPFLAGS = $(AM_CPPFLAGS)
512unity_LDFLAGS = $(AM_LDFLAGS) $(BOOST_FILESYSTEM_LDFLAGS) $(BOOST_PROGRAM_OPTIONS_LDFLAGS) $(BOOST_RANDOM_LDFLAGS) $(BOOST_SYSTEM_LDFLAGS) $(BOOST_THREAD_LDFLAGS)
513unity_LDADD = \
514 ${CodePatterns_LIBS} \
515 $(BOOST_THREAD_LIBS) \
516 $(BOOST_PROGRAM_OPTIONS_LIBS) \
517 $(BOOST_RANDOM_LIBS) \
518 $(BOOST_FILESYSTEM_LIBS) \
519 $(BOOST_SYSTEM_LIBS)
520
521
522FORCE:
523$(srcdir)/.git-version: FORCE
524 @if (test -d $(top_srcdir)/.git && cd $(srcdir) \
525 && { git describe --dirty --always || git describe; } ) > .git-version-t 2>/dev/null \
526 && ! diff .git-version-t $(srcdir)/.git-version >/dev/null 2>&1; then \
527 mv -f .git-version-t $(srcdir)/.git-version; \
528 else \
529 rm -f .git-version-t; \
530 fi
531
532EXTRA_DIST += \
533 $(srcdir)/.git-version \
534 $(bondtable_DATA) \
535 $(database_DATA) \
536 $(molecule_DATA)
537
538$(srcdir)/version.c: $(srcdir)/.git-version
539 echo "const char *MOLECUILDERVERSION = \"$(PACKAGE_NAME) version "`cat $(srcdir)/.git-version`"\";" > $@
540
541
542unity.cpp: ${MOLECUILDERSOURCE} ${MOLECUILDERHEADER}
543 list='$(MOLECUILDERSOURCE)'; for file in $$list; do \
544 echo "#include \"$(srcdir)/$$file\"" >> unity.cpp; \
545 done; \
546 subdirs='$(SUBDIRS)';for directory in $$subdirs; do\
547 olddir=$$PWD;\
548 cd $$directory && make unity.cpp;\
549 cd $$olddir;\
550 echo "#include \"$$directory/unity.cpp\"" >> unity.cpp;\
551 done;\
552 echo "#include \"$(srcdir)/builder.cpp\"" >> unity.cpp;
553 echo "#include \"$(srcdir)/version.c\"" >> unity.cpp;
554
555MOSTLYCLEANFILES += unity.cpp
556
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