source: src/Jobs/VMGJob.hpp@ 6ff62c

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Last change on this file since 6ff62c was fbf143, checked in by Frederik Heber <heber@…>, 12 years ago

Placed Containers, Converter, and SetValues as subfolders into Summation.

  • also libMolecuilderFragmentationSummation is now a shared library, easing linkage to libMolecuilderJobs, and contains all of the three convenience libraries.
  • libMolecuilderFragmentationSetValues is now again convenience, as contained in ..Summation which in turn is shared.
  • KeySetsContainer right now is the link between lib..Summation and lib.. Fragmentation. Hence, we had to extract the module and change it into a shared library, as it is required by libMolecuilderJobs through ..Summation but also by ..Fragmentation that heavily relies on this container.
  • moved parseKeySetFile down into Fragmentation folder to KeySetsContainer, it is also contained in new shared library libMolecuilderFragmentation_ KeySetsContainer.
  • Property mode set to 100644
File size: 3.5 KB
Line 
1/*
2 * VMGJob.hpp
3 *
4 * Created on: Jul 12, 2012
5 * Author: heber
6 */
7
8#ifndef VMGJOB_HPP_
9#define VMGJOB_HPP_
10
11
12// include config.h
13#ifdef HAVE_CONFIG_H
14#include <config.h>
15#endif
16
17#include "boost/serialization/export.hpp"
18#include "boost/serialization/vector.hpp"
19
20#include "JobMarket/Jobs/FragmentJob.hpp"
21#include "Fragmentation/Summation/SetValues/SamplingGrid.hpp"
22#include "Fragmentation/Summation/Containers/VMGData.hpp"
23
24#include <vector>
25
26/** This class encapsulates a VMG Job.
27 *
28 * VMGJob calculates the long-range contribution that is missed out so far in the
29 * MPQCJob where the SCF cycle is calculated. To this end
30 *
31 */
32class VMGJob : public FragmentJob
33{
34public:
35 /** Constructor for class VMGJob.
36 *
37 * @param _JobId id of the job
38 * @param _density_grid sampled electron charge density from short-range solutions
39 * @param _particle_positions position per nuclei
40 * @param _particle_charges charges per nuclei
41 * @param _near_field_cells number of grid-points used to smear our nuclei charge
42 * @param _interpolation_degree degree of interpolation polynomial for getting nuclei
43 * potential from grid
44 */
45 VMGJob(const JobId_t _JobId,
46 const SamplingGrid &density_grid,
47 const std::vector< std::vector< double > > &_particle_positions,
48 const std::vector< double > &_particle_charges,
49 const size_t _near_field_cells,
50 const size_t _interpolation_degree
51 );
52 virtual ~VMGJob();
53
54 FragmentResult::ptr Work();
55
56private:
57 void InitVMG();
58
59 void InitVMGArrays();
60
61private:
62 //!> sampled density required as input
63 const SamplingGrid density_grid;
64 //!> positions of all nuclei
65 const std::vector< std::vector< double > > particle_positions;
66 //!> charges of all nuclei
67 const std::vector< double > particle_charges;
68 //!> near field cells used in smearing out core charge density
69 const size_t near_field_cells;
70 //!> interpolation degree used in sampling the potential of the nuclei
71 const size_t interpolation_degree;
72
73private:
74 //!> temporary instance to hold return data
75 VMGData returndata;
76
77 /** This structure stores particle values per particle.
78 *
79 * \note This structure contains temporary information needed during solving
80 * with VMG.
81 * \warning It is specifically not serialized!
82 *
83 */
84 struct particle_arrays {
85 particle_arrays();
86 ~particle_arrays();
87
88 /** Initializes arrays.
89 *
90 * @param _num_particles size of array per dimension
91 */
92 void init(const size_t _num_particles);
93
94 //!> number of particles
95 size_t num_particles;
96 //!> forces array
97 double *f;
98 //!> position array
99 double *x;
100 //!> potential array
101 double *p;
102 //!> charge array
103 double *q;
104 } particles;
105
106private:
107 /** private default cstor for serialization only
108 */
109 VMGJob();
110
111 friend class boost::serialization::access;
112 // serialization
113 template <typename Archive>
114 void serialize(Archive& ar, const unsigned int version)
115 {
116 ar & boost::serialization::base_object<FragmentJob>(*this);
117 ar & const_cast< SamplingGrid &>(density_grid);
118 ar & const_cast< std::vector< std::vector< double > > &>(particle_positions);
119 ar & const_cast< std::vector< double > &>(particle_charges);
120 ar & const_cast< size_t &>(near_field_cells);
121 ar & const_cast< size_t &>(interpolation_degree);
122 ar & returndata;
123 }
124};
125
126// we need to give this class a unique key for serialization
127// its is only serialized through its base class FragmentJob
128BOOST_CLASS_EXPORT_KEY(VMGJob)
129
130#endif /* VMGJOB_HPP_ */
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