Action_Thermostats
Add_AtomRandomPerturbation
Add_FitFragmentPartialChargesAction
Add_RotateAroundBondAction
Add_SelectAtomByNameAction
Added_ParseSaveFragmentResults
AddingActions_SaveParseParticleParameters
Adding_Graph_to_ChangeBondActions
Adding_MD_integration_tests
Adding_ParticleName_to_Atom
Adding_StructOpt_integration_tests
AtomFragments
Automaking_mpqc_open
AutomationFragmentation_failures
Candidate_v1.5.4
Candidate_v1.6.0
Candidate_v1.6.1
ChangeBugEmailaddress
ChangingTestPorts
ChemicalSpaceEvaluator
CombiningParticlePotentialParsing
Combining_Subpackages
Debian_Package_split
Debian_package_split_molecuildergui_only
Disabling_MemDebug
Docu_Python_wait
EmpiricalPotential_contain_HomologyGraph
EmpiricalPotential_contain_HomologyGraph_documentation
Enable_parallel_make_install
Enhance_userguide
Enhanced_StructuralOptimization
Enhanced_StructuralOptimization_continued
Example_ManyWaysToTranslateAtom
Exclude_Hydrogens_annealWithBondGraph
FitPartialCharges_GlobalError
Fix_BoundInBox_CenterInBox_MoleculeActions
Fix_ChargeSampling_PBC
Fix_ChronosMutex
Fix_FitPartialCharges
Fix_FitPotential_needs_atomicnumbers
Fix_ForceAnnealing
Fix_IndependentFragmentGrids
Fix_ParseParticles
Fix_ParseParticles_split_forward_backward_Actions
Fix_PopActions
Fix_QtFragmentList_sorted_selection
Fix_Restrictedkeyset_FragmentMolecule
Fix_StatusMsg
Fix_StepWorldTime_single_argument
Fix_Verbose_Codepatterns
Fix_fitting_potentials
Fixes
ForceAnnealing_goodresults
ForceAnnealing_oldresults
ForceAnnealing_tocheck
ForceAnnealing_with_BondGraph
ForceAnnealing_with_BondGraph_continued
ForceAnnealing_with_BondGraph_continued_betteresults
ForceAnnealing_with_BondGraph_contraction-expansion
FragmentAction_writes_AtomFragments
FragmentMolecule_checks_bonddegrees
GeometryObjects
Gui_Fixes
Gui_displays_atomic_force_velocity
ImplicitCharges
IndependentFragmentGrids
IndependentFragmentGrids_IndividualZeroInstances
IndependentFragmentGrids_IntegrationTest
IndependentFragmentGrids_Sole_NN_Calculation
JobMarket_RobustOnKillsSegFaults
JobMarket_StableWorkerPool
JobMarket_unresolvable_hostname_fix
MoreRobust_FragmentAutomation
ODR_violation_mpqc_open
PartialCharges_OrthogonalSummation
PdbParser_setsAtomName
PythonUI_with_named_parameters
QtGui_reactivate_TimeChanged_changes
Recreated_GuiChecks
Rewrite_FitPartialCharges
RotateToPrincipalAxisSystem_UndoRedo
SaturateAtoms_findBestMatching
SaturateAtoms_singleDegree
StoppableMakroAction
Subpackage_CodePatterns
Subpackage_JobMarket
Subpackage_LinearAlgebra
Subpackage_levmar
Subpackage_mpqc_open
Subpackage_vmg
Switchable_LogView
ThirdParty_MPQC_rebuilt_buildsystem
TrajectoryDependenant_MaxOrder
TremoloParser_IncreasedPrecision
TremoloParser_MultipleTimesteps
TremoloParser_setsAtomName
Ubuntu_1604_changes
stable
Last change
on this file since 5ffa05 was 004d5c, checked in by Frederik Heber <heber@…>, 13 years ago |
Removed JobMarket as it is now in its own repository.
- added ax_jobmarket.m4.
- added check to configure.ac
- Removed libraries libJobMarket... in Makefile.am's, replaced by
JobMarket_..._LIBS.
- changed some includes that now required JobMarket/ prefix.
Larger change to get JobMarket including its tests out of MoleCuilder:
- configure has new enable-switch for JobMarket. Only then, we tests for its
presence and usability (and also for boost::asio).
- I do not know how to check for AM_CONDITIONAL or config.h values properly in
a shell. Hence, I moved all regression tests dealing with the JobMarket into
their own folder tests/JobMarket with depends on CONDJOBMARKET whether its
included or not, similar to tests/Python.
- TESTFIX: regression tests moved to tests/JobMarket have their paths changed.
- FragmentationAutomationAction is now conditionally compiled in as well.
- some Makefile.am's changed because we now have JobMarket_CFLAGS and _LIBS
similar CodePatterns.
- We use boost::preprocessor to add it dependently on HAVE_JOBMARKET to
src/Actions/GlobalListOfActions.
- TESTFIX: The former required a small change to CodeChecks test
testsuite-globallistofactions_hpp as we can check no longer for the action
name within brackets there.
- FIX: I removed some unnecessary includes (defs.hpp) from MPQCCommandJob...hpp
into the .cpp files.
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set to
100644
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File size:
1.8 KB
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1 | /*
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2 | * Project: MoleCuilder
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3 | * Description: creates and alters molecular systems
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4 | * Copyright (C) 2012 University of Bonn. All rights reserved.
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5 | * Please see the LICENSE file or "Copyright notice" in builder.cpp for details.
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6 | */
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7 |
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8 | /*
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9 | * MPQCCommandJob_MPQCData.cpp
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10 | *
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11 | * Created on: Feb 08, 2012
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12 | * Author: heber
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13 | */
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14 |
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15 | // include config.h
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16 | #ifdef HAVE_CONFIG_H
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17 | #include <config.h>
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18 | #endif
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19 |
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20 | #include "CodePatterns/MemDebug.hpp"
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21 |
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22 | #include "MPQCCommandJob_MPQCData.hpp"
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23 |
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24 | #include <iostream>
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25 | #include <limits>
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26 |
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27 | #include "CodePatterns/Log.hpp"
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28 | #include "LinearAlgebra/defs.hpp"
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29 |
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30 |
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31 | /** Constructor for class MPQCData.
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32 | *
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33 | */
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34 | MPQCData::MPQCData() :
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35 | energy(0.)
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36 | {}
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37 |
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38 | /** Destructor for class MPQCData.
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39 | *
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40 | */
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41 | MPQCData::~MPQCData()
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42 | {}
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43 |
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44 | /** Comparator for class MPQCData.
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45 | *
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46 | */
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47 | bool MPQCData::operator==(const MPQCData &other) const
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48 | {
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49 | if (fabs(energy - other.energy) > std::numeric_limits<double>::epsilon()) {
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50 | LOG(1, "INFO: Energy's in MPQCData differ: "
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51 | << energy << " != " << other.energy << ".");
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52 | return false;
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53 | }
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54 | if (forces.size() != other.forces.size()) {
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55 | LOG(1, "INFO: Forces's in MPQCData differ in size: "
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56 | << forces.size() << " != " << other.forces.size() << ".");
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57 | return false;
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58 | }
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59 | for (size_t i = 0; i < forces.size(); ++i)
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60 | for (size_t index = 0; index < NDIM; ++index)
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61 | if (fabs(forces[i][index] - other.forces[i][index]) > std::numeric_limits<double>::epsilon()) {
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62 | LOG(1, "INFO: " << index << "th component of force of particle "
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63 | << i << " in MPQCData differ: " << forces[i][index]
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64 | << " != " << other.forces[i][index] << ".");
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65 | return false;
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66 | }
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67 | return true;
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68 | }
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69 |
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70 | std::ostream & operator<<(std::ostream &ost, const MPQCData &data)
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71 | {
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72 | ost << "Energy: " << data.energy << "\t";
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73 | ost << "Forces: " << data.forces;
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74 | return ost;
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75 | }
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