source: src/IdPool_impl.hpp@ 2a0271

Action_Thermostats Add_AtomRandomPerturbation Add_FitFragmentPartialChargesAction Add_RotateAroundBondAction Add_SelectAtomByNameAction Added_ParseSaveFragmentResults AddingActions_SaveParseParticleParameters Adding_Graph_to_ChangeBondActions Adding_MD_integration_tests Adding_ParticleName_to_Atom Adding_StructOpt_integration_tests AtomFragments Automaking_mpqc_open AutomationFragmentation_failures Candidate_v1.5.4 Candidate_v1.6.0 Candidate_v1.6.1 ChangeBugEmailaddress ChangingTestPorts ChemicalSpaceEvaluator CombiningParticlePotentialParsing Combining_Subpackages Debian_Package_split Debian_package_split_molecuildergui_only Disabling_MemDebug Docu_Python_wait EmpiricalPotential_contain_HomologyGraph EmpiricalPotential_contain_HomologyGraph_documentation Enable_parallel_make_install Enhance_userguide Enhanced_StructuralOptimization Enhanced_StructuralOptimization_continued Example_ManyWaysToTranslateAtom Exclude_Hydrogens_annealWithBondGraph FitPartialCharges_GlobalError Fix_BoundInBox_CenterInBox_MoleculeActions Fix_ChargeSampling_PBC Fix_ChronosMutex Fix_FitPartialCharges Fix_FitPotential_needs_atomicnumbers Fix_ForceAnnealing Fix_IndependentFragmentGrids Fix_ParseParticles Fix_ParseParticles_split_forward_backward_Actions Fix_PopActions Fix_QtFragmentList_sorted_selection Fix_Restrictedkeyset_FragmentMolecule Fix_StatusMsg Fix_StepWorldTime_single_argument Fix_Verbose_Codepatterns Fix_fitting_potentials Fixes ForceAnnealing_goodresults ForceAnnealing_oldresults ForceAnnealing_tocheck ForceAnnealing_with_BondGraph ForceAnnealing_with_BondGraph_continued ForceAnnealing_with_BondGraph_continued_betteresults ForceAnnealing_with_BondGraph_contraction-expansion FragmentAction_writes_AtomFragments FragmentMolecule_checks_bonddegrees GeometryObjects Gui_Fixes Gui_displays_atomic_force_velocity ImplicitCharges IndependentFragmentGrids IndependentFragmentGrids_IndividualZeroInstances IndependentFragmentGrids_IntegrationTest IndependentFragmentGrids_Sole_NN_Calculation JobMarket_RobustOnKillsSegFaults JobMarket_StableWorkerPool JobMarket_unresolvable_hostname_fix MoreRobust_FragmentAutomation ODR_violation_mpqc_open PartialCharges_OrthogonalSummation PdbParser_setsAtomName PythonUI_with_named_parameters QtGui_reactivate_TimeChanged_changes Recreated_GuiChecks Rewrite_FitPartialCharges RotateToPrincipalAxisSystem_UndoRedo SaturateAtoms_findBestMatching SaturateAtoms_singleDegree StoppableMakroAction Subpackage_CodePatterns Subpackage_JobMarket Subpackage_LinearAlgebra Subpackage_levmar Subpackage_mpqc_open Subpackage_vmg Switchable_LogView ThirdParty_MPQC_rebuilt_buildsystem TrajectoryDependenant_MaxOrder TremoloParser_IncreasedPrecision TremoloParser_MultipleTimesteps TremoloParser_setsAtomName Ubuntu_1604_changes stable
Last change on this file since 2a0271 was b97a60, checked in by Frederik Heber <heber@…>, 13 years ago

Modified IdPool implementation to give either unique or continuous ids.

  • added two class uniqueId and continuousId that get the id type via a template and contain a getNextId_impl(). Also, contains typedef is is_IdPool_trait:
    • uniqueId always return a greater id.
    • continuousId implements the old way.
  • IdPool is now based on two templates, the second is the template that is inherited and its contained function used in getNextId().
  • for atoms the id is the sole identifier for which we can guarantee uniqueness. For molecules uniqueness does not make sense.
  • updated World's documentation on its id pools.
  • TESTFIX: Filling/FillVoidWithMolecule - both changed because the order of the ids has changed. In one case the bonding id flipped, in the other one atom changed places in .xyz file. (Actually, it's surprising that this is the only glitch occuring due to the changing of the id policy).
  • Property mode set to 100644
File size: 3.7 KB
Line 
1/*
2 * IdPool_impl.hpp
3 *
4 * Created on: Dec 23, 2011
5 * Author: heber
6 */
7
8#ifndef IDPOOL_IMPL_HPP_
9#define IDPOOL_IMPL_HPP_
10
11// include config.h
12#ifdef HAVE_CONFIG_H
13#include <config.h>
14#endif
15
16#include "IdPool.hpp"
17
18#include "CodePatterns/Log.hpp"
19
20template <class T, class idpolicy>
21IdPool<T,idpolicy>::IdPool(const T _currId, const unsigned int _max_skips, const unsigned int _max_size) :
22 lastAction(NoAction),
23 currId(_currId),
24 lastPoolSize(0),
25 numDefragSkips(0),
26 MAX_FRAGMENTATION_SKIPS(_max_skips),
27 MAX_POOL_FRAGMENTATION(_max_size)
28{}
29
30template <class T, class idpolicy>
31IdPool<T,idpolicy>::~IdPool()
32{}
33
34template <class T, class idpolicy>
35T IdPool<T,idpolicy>::getNextId()
36{
37 setLastAction(reserve);
38 return idpolicy::getNextId_impl(pool, currId);
39}
40
41template <class T, class idpolicy>
42void IdPool<T,idpolicy>::releaseId(T id)
43{
44 setLastAction(release);
45 pool.insert(makeRange(id,id+1));
46 defragIdPool();
47}
48
49template <class T, class idpolicy>
50bool IdPool<T,idpolicy>::reserveId(T id)
51{
52 setLastAction(reserve);
53 if(id>=currId ) {
54 range<T> newRange = makeRange(currId,id);
55 if(newRange.first<newRange.last)
56 pool.insert(newRange);
57 currId=id+1;
58 defragIdPool();
59 return true;
60 }
61 // look for a range that matches the request
62 for(typename IdPool_t::iterator iter=pool.begin();iter!=pool.end();++iter){
63 if(iter->isBefore(id)){
64 // we have covered all available ranges... nothing to be found here
65 break;
66 }
67 // no need to check first, since it has to be <=id, since otherwise we would have broken out
68 if(!iter->isBeyond(id)){
69 // we found a matching range... get the id from this range
70
71 // split up this range at the point of id
72 range<T> bottomRange = makeRange(iter->first,id);
73 range<T> topRange = makeRange(id+1,iter->last);
74 // remove this range
75 pool.erase(iter);
76 if(bottomRange.first<bottomRange.last){
77 pool.insert(bottomRange);
78 }
79 if(topRange.first<topRange.last){
80 pool.insert(topRange);
81 }
82 defragIdPool();
83 return true;
84 }
85 }
86 // this ID could not be reserved
87 return false;
88}
89
90template <class T, class idpolicy>
91void IdPool<T,idpolicy>::defragIdPool()
92{
93 // check if the situation is bad enough to make defragging neccessary
94 if((numDefragSkips<MAX_FRAGMENTATION_SKIPS) &&
95 (pool.size()<lastPoolSize+MAX_POOL_FRAGMENTATION)) {
96 return;
97 }
98 LOG(1, "STATUS: Defragmenting id pool.");
99 for(typename IdPool_t::iterator iter = pool.begin();iter!=pool.end();) {
100 // see if this range is adjacent to the next one
101 typename IdPool_t::iterator next = iter;
102 next++;
103 if(next!=pool.end() && (next->first==iter->last)) {
104 // merge the two ranges
105 range<T> newRange = makeRange(iter->first,next->last);
106 pool.erase(iter);
107 pool.erase(next);
108 pair<typename IdPool_t::iterator,bool> res = pool.insert(newRange);
109 ASSERT(res.second,"Id-Pool was confused");
110 iter=res.first;
111 continue;
112 }
113 ++iter;
114 }
115 if(!pool.empty()) {
116 // check if the last range is at the border
117 typename IdPool_t::iterator iter = pool.end();
118 iter--;
119 if(iter->last==currId){
120 currId=iter->first;
121 pool.erase(iter);
122 }
123 }
124 lastPoolSize=pool.size();
125 numDefragSkips=0;
126}
127
128/**
129 * This define allows simple instantiation of the necessary singleton functions
130 * at a chosen place.
131 */
132#define CONSTRUCT_IDPOOL(name, idpolicy) \
133 template name IdPool< name, idpolicy >::getNextId(); \
134 template bool IdPool< name, idpolicy >::reserveId( name ); \
135 template void IdPool< name, idpolicy >::releaseId( name ); \
136 template void IdPool< name, idpolicy >::setLastAction(const enum Actions _action); \
137 template void IdPool< name, idpolicy >::defragIdPool() ;
138
139#endif /* IDPOOL_IMPL_HPP_ */
Note: See TracBrowser for help on using the repository browser.