1 | /*
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2 | * Project: MoleCuilder
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3 | * Description: creates and alters molecular systems
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4 | * Copyright (C) 2010 University of Bonn. All rights reserved.
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5 | * Please see the LICENSE file or "Copyright notice" in builder.cpp for details.
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6 | */
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7 |
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8 | /*
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9 | * defs.cpp
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10 | *
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11 | * Created on: Aug 7, 2010
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12 | * Author: heber
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13 | */
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14 |
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15 | // include config.h
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16 | #ifdef HAVE_CONFIG_H
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17 | #include <config.h>
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18 | #endif
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19 |
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20 | #include "CodePatterns/MemDebug.hpp"
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21 |
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22 | #include "Helpers/defs.hpp"
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23 |
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24 | const double MYEPSILON=1e-13; //!< machine epsilon precision
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25 | const double AtomicLengthToAngstroem = 0.52917721; //!< conversion factor from atomic length/bohrradius to angstroem
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26 | const double AtomicEnergyToKelvin = 315774.67; //!< conversion factor from atomic energy to kelvin via boltzmann factor
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27 | const double KelvinToAtomicTemperature = 3.1668152e-06; //!< conversion factor for Kelvin to atomic temperature (Hartree over k_B)
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28 | const double KelvinToeV = 8.6173422e-05; //!< conversion factor for Kelvin to Ht (k_B * T = energy), thus Boltzmann constant in eV/K
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29 | const double AtomicMassUnitsToeV = 931494088.; //!< conversion factor for atomic weight in units to mass in eV
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30 | const double AtomicMassUnitsToHt = 34480864.; //!< conversion factor for atomic weight in units to mass in Ht (protonmass/electronmass * electron_mass_in_Ht
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31 | const double ElectronMass_Ht = 18778.865; //!< electron mass in Ht
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32 | const double ElectronMass_eV = 510998.903; //!< electron mass in eV
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33 | const double Units2Electronmass = (AtomicMassUnitsToeV/ElectronMass_eV); //!< atomic mass unit in eV/ electron mass in eV = 1 822.88863
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34 | const double Atomictime2Femtoseconds = 0.024188843; //!< Atomictime in fs
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35 |
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36 | const char* VERSIONSTRING = "v1.0";
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37 |
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38 | const char* LocalPath="./";
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39 |
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40 | // various standard filenames
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41 | const char *DEFAULTCONFIG = "main_pcp_linux"; //!< default filename of config file
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42 | const char *CONVEXENVELOPE = "ConvexEnvelope.dat"; //!< default filename of convex envelope tecplot data file
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43 | const char *KEYSETFILE = "KeySets.dat"; //!< default filename of BOSSANOVA key sets file
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44 | const char *ADJACENCYFILE = "Adjacency.dat"; //!< default filename of BOSSANOVA adjacancy file
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45 | const char *TEFACTORSFILE = "TE-Factors.dat"; //!< default filename of BOSSANOVA total energy factors file
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46 | const char *FORCESFILE = "Forces-Factors.dat"; //!< default filename of BOSSANOVA force factors file
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47 | const char *HCORRECTIONSUFFIX = "Hcorrection.dat"; //!< default filename of BOSSANOVA H correction file (unwanted saturation interaction)
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48 | const char *FITCONSTANTSUFFIX = "FitConstant.dat"; //!< suffix of default filename of BOSSANOVA fit constants file (unwanted saturation interaction)
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49 | const char *SHIELDINGSUFFIX = "sigma_all.csv"; //!< default filename of BOSSANOVA shieldings file
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50 | const char *SHIELDINGPASSUFFIX = "sigma_all_PAS.csv"; //!< default filename of BOSSANOVA shieldings PAS file
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51 | const char *ORDERATSITEFILE = "OrderAtSite.dat"; //!< default filename of BOSSANOVA Bond Order at each atom file
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52 | const char *ENERGYPERFRAGMENT = "EnergyPerFragment"; //!< default filename of BOSSANOVA Energy contribution Per Fragment file
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53 | const char *FRAGMENTPREFIX = "BondFragment"; //!< default filename prefix of BOSSANOVA fragment config and directories
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54 | const char *STANDARDCONFIG = "unknown.conf"; //!< default filename of standard config file
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55 | const char *STANDARDELEMENTSDB = "elements.db"; //!< default filename of elements data base with masses, Z, VanDerWaals radii, ...
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56 | const char *STANDARDELECTRONEGATIVITYDB = "electronegativity.db"; //!< default filename of electronegativity per element number data base
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57 | const char *STANDARDVALENCEDB = "valence.db"; //!< default filename of valence number per element database
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58 | const char *STANDARDORBITALDB = "orbitals.db"; //!< default filename of orbitals per element database
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59 | const char *STANDARDHBONDDISTANCEDB = "Hbonddistance.db"; //!< default filename of typial bond distance to hydrogen database
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60 | const char *STANDARDHBONDANGLEDB = "Hbondangle.db"; //!< default filename of typial bond angle to hydrogen database
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61 | const char *STANDARDCOLORDB = "color.db"; //!< default filename of typial bond angle to hydrogen database
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62 |
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63 | // some values
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64 | const double SOLVENTDENSITY_A = 0.6022142;
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65 | const double SOLVENTDENSITY_a0 = 0.089238936;
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66 |
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67 |
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68 | const int UPDATECOUNT = 10; //!< update ten sites per BOSSANOVA interval
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69 |
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70 | const int STD_MENU_LENGTH = 60;
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71 | const char STD_MENU_TITLE_SPACER = '=';
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72 | const char STD_SEPERATOR_SPACER = '-';
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73 |
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74 | const char *MOLECUILDER_NAME = "Molecuilder";
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