| 1 | /*
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| 2 |  * Project: MoleCuilder
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| 3 |  * Description: creates and alters molecular systems
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| 4 |  * Copyright (C)  2010 University of Bonn. All rights reserved.
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| 5 |  * Please see the LICENSE file or "Copyright notice" in builder.cpp for details.
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| 6 |  */
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| 7 | 
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| 8 | /** \file parsing.cpp
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| 9 |  *
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| 10 |  * Declarations of various class functions for the parsing of value files.
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| 11 |  *
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| 12 |  */
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| 13 | 
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| 14 | // ======================================= INCLUDES ==========================================
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| 15 | 
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| 16 | // include config.h
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| 17 | #ifdef HAVE_CONFIG_H
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| 18 | #include <config.h>
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| 19 | #endif
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| 20 | 
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| 21 | #include "CodePatterns/MemDebug.hpp"
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| 22 | 
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| 23 | #include <fstream>
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| 24 | #include <cmath>
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| 25 | 
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| 26 | #include "CodePatterns/Log.hpp"
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| 27 | 
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| 28 | #include "Helpers/defs.hpp"
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| 29 | 
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| 30 | #include "Fragmentation/helpers.hpp"
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| 31 | 
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| 32 | // ======================================= FUNCTIONS ==========================================
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| 33 | 
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| 34 | /** Test if given filename can be opened.
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| 35 |  * \param filename name of file
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| 36 |  * \param test true - no error message, false - print error
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| 37 |  * \return given file exists
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| 38 |  */
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| 39 | bool FilePresent(const char *filename, bool test)
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| 40 | {
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| 41 |   std::ifstream input;
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| 42 | 
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| 43 |   input.open(filename, ios::in);
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| 44 |   if (input.fail()) {
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| 45 |     if (!test)
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| 46 |       LOG(0, endl << "FilePresent: Unable to open " << filename << ", is the directory correct?");
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| 47 |     return false;
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| 48 |   }
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| 49 |   input.close();
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| 50 |   return true;
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| 51 | };
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| 52 | 
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| 53 | /** Test the given parameters.
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| 54 |  * \param argc argument count
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| 55 |  * \param **argv arguments array
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| 56 |  * \return given inputdir is valid
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| 57 |  */
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| 58 | bool TestParams(int argc, char **argv)
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| 59 | {
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| 60 |   std::ifstream input;
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| 61 |   stringstream line;
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| 62 | 
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| 63 |   line << argv[1] << FRAGMENTPREFIX << KEYSETFILE;
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| 64 |   return FilePresent(line.str().c_str(), false);
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| 65 | };
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| 66 | 
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| 67 | /** Returns a string with \a i prefixed with 0s to match order of total number of molecules in digits.
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| 68 |  * \param FragmentNumber total number of fragments to determine necessary number of digits
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| 69 |  * \param digits number to create with 0 prefixed
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| 70 |  * \return allocated(!) char array with number in digits, ten base.
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| 71 |  */
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| 72 | char *FixedDigitNumber(const int FragmentNumber, const int digits)
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| 73 | {
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| 74 |   char *returnstring;
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| 75 |   int number = FragmentNumber;
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| 76 |   int order = 0;
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| 77 |   while (number != 0) { // determine number of digits needed
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| 78 |     number = (int)floor(((double)number / 10.));
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| 79 |     order++;
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| 80 |     //LOG(0, "Number is " << number << ", order is " << order << ".");
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| 81 |   }
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| 82 |   // allocate string
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| 83 |   returnstring = new char[order + 2];
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| 84 |   // terminate  and fill string array from end backward
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| 85 |   returnstring[order] = '\0';
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| 86 |   number = digits;
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| 87 |   for (int i=order;i--;) {
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| 88 |     returnstring[i] = '0' + (char)(number % 10);
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| 89 |     number = (int)floor(((double)number / 10.));
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| 90 |   }
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| 91 |   //LOG(0, returnstring);
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| 92 |   return returnstring;
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| 93 | };
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