source: src/Fragmentation/Summation/SetValues/IndexedVectors.cpp@ e2925fd

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Last change on this file since e2925fd was fbf143, checked in by Frederik Heber <heber@…>, 12 years ago

Placed Containers, Converter, and SetValues as subfolders into Summation.

  • also libMolecuilderFragmentationSummation is now a shared library, easing linkage to libMolecuilderJobs, and contains all of the three convenience libraries.
  • libMolecuilderFragmentationSetValues is now again convenience, as contained in ..Summation which in turn is shared.
  • KeySetsContainer right now is the link between lib..Summation and lib.. Fragmentation. Hence, we had to extract the module and change it into a shared library, as it is required by libMolecuilderJobs through ..Summation but also by ..Fragmentation that heavily relies on this container.
  • moved parseKeySetFile down into Fragmentation folder to KeySetsContainer, it is also contained in new shared library libMolecuilderFragmentation_ KeySetsContainer.
  • Property mode set to 100644
File size: 4.0 KB
Line 
1/*
2 * Project: MoleCuilder
3 * Description: creates and alters molecular systems
4 * Copyright (C) 2012 University of Bonn. All rights reserved.
5 *
6 *
7 * This file is part of MoleCuilder.
8 *
9 * MoleCuilder is free software: you can redistribute it and/or modify
10 * it under the terms of the GNU General Public License as published by
11 * the Free Software Foundation, either version 2 of the License, or
12 * (at your option) any later version.
13 *
14 * MoleCuilder is distributed in the hope that it will be useful,
15 * but WITHOUT ANY WARRANTY; without even the implied warranty of
16 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
17 * GNU General Public License for more details.
18 *
19 * You should have received a copy of the GNU General Public License
20 * along with MoleCuilder. If not, see <http://www.gnu.org/licenses/>.
21 */
22
23/*
24 * IndexedVectors.cpp
25 *
26 * Created on: 29.07.2012
27 * Author: heber
28 */
29
30// include config.h
31#ifdef HAVE_CONFIG_H
32#include <config.h>
33#endif
34
35#include "CodePatterns/MemDebug.hpp"
36
37#include "Fragmentation/Summation/SetValues/IndexedVectors.hpp"
38
39#include <iostream>
40
41#include "CodePatterns/Assert.hpp"
42
43// static member variables
44const size_t IndexedVectors::FixedSize = 3;
45const IndexedVectors::vector_t IndexedVectors::nullvector( FixedSize, 0.);
46
47IndexedVectors::IndexedVectors(const indices_t &_indices, const vectors_t &_vectors)
48{
49 ASSERT(_indices.size() == _vectors.size(),
50 "IndexedVectors::IndexedVectors() - vector of indices and vectors don't match in size.");
51 indices_t::const_iterator indexiter = _indices.begin();
52 vectors_t::const_iterator vectoriter = _vectors.begin();
53 for (; vectoriter != _vectors.end(); ++indexiter, ++vectoriter) {
54 ASSERT( vectoriter->size() == FixedSize,
55 "IndexedVectors::IndexedVectors() - vector to instance "
56 +toString(*indexiter)+" has size "
57 +toString(vectoriter->size())+" different to FixedSize "
58 +toString(FixedSize)+".");
59 if (*indexiter != (size_t)DropIndex) { // skip all force vectors associated to -1
60#ifndef NDEBUG
61 std::pair<indexedvectors_t::iterator, bool> inserter =
62#endif
63 vectors.insert( std::make_pair( *indexiter, *vectoriter) );
64 ASSERT( inserter.second,
65 "IndexedVectors::IndexedVectors() - index "
66 +toString(inserter.first->first)+" already present with vector "
67 +toString(inserter.first->second)+".");
68 }
69 }
70}
71
72IndexedVectors& IndexedVectors::operator=(const IndexedVectors &other)
73{
74 // check for self-assignment
75 if (this != &other) {
76 vectors.clear();
77 vectors = other.vectors;
78 }
79 return *this;
80}
81
82void IndexedVectors::superposeOtherIndexedVectors(const IndexedVectors &other, const double prefactor)
83{
84 for (indexedvectors_t::const_iterator otheriter = other.vectors.begin();
85 otheriter != other.vectors.end(); ++otheriter) {
86 indexedvectors_t::iterator iter = vectors.find(otheriter->first);
87 if (iter == vectors.end()) {
88 // index does not exist
89 std::pair<indexedvectors_t::iterator, bool> inserter =
90 vectors.insert( std::make_pair( otheriter->first, nullvector) );
91 ASSERT( inserter.second,
92 "IndexedVectors::superposeOtherIndexedVectors() - index is present though unfound before?");
93 iter = inserter.first;
94 }
95 // now simply vector to index from other instance add with prefactor
96 vector_t::iterator vectoriter = iter->second.begin();
97 vector_t::const_iterator othervectoriter = otheriter->second.begin();
98 for (;vectoriter != iter->second.end(); ++vectoriter, ++othervectoriter) {
99 *vectoriter += prefactor * (*othervectoriter);
100 }
101 }
102}
103
104std::ostream & operator<<(std::ostream &ost, const IndexedVectors &other)
105{
106 for (IndexedVectors::indexedvectors_t::const_iterator iter = other.vectors.begin();
107 iter != other.vectors.end(); ++iter)
108 ost << "(" << iter->first << "," << iter->second << ") ";
109 return ost;
110}
111
112template<> IndexedVectors ZeroInstance<IndexedVectors>()
113{
114 IndexedVectors returnvalue;
115 return returnvalue;
116}
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