source: src/Fragmentation/Summation/Containers/MPQCData.cpp@ e2925fd

Action_Thermostats Add_AtomRandomPerturbation Add_FitFragmentPartialChargesAction Add_RotateAroundBondAction Add_SelectAtomByNameAction Added_ParseSaveFragmentResults AddingActions_SaveParseParticleParameters Adding_Graph_to_ChangeBondActions Adding_MD_integration_tests Adding_ParticleName_to_Atom Adding_StructOpt_integration_tests AtomFragments Automaking_mpqc_open AutomationFragmentation_failures Candidate_v1.5.4 Candidate_v1.6.0 Candidate_v1.6.1 ChangeBugEmailaddress ChangingTestPorts ChemicalSpaceEvaluator CombiningParticlePotentialParsing Combining_Subpackages Debian_Package_split Debian_package_split_molecuildergui_only Disabling_MemDebug Docu_Python_wait EmpiricalPotential_contain_HomologyGraph EmpiricalPotential_contain_HomologyGraph_documentation Enable_parallel_make_install Enhance_userguide Enhanced_StructuralOptimization Enhanced_StructuralOptimization_continued Example_ManyWaysToTranslateAtom Exclude_Hydrogens_annealWithBondGraph FitPartialCharges_GlobalError Fix_BoundInBox_CenterInBox_MoleculeActions Fix_ChargeSampling_PBC Fix_ChronosMutex Fix_FitPartialCharges Fix_FitPotential_needs_atomicnumbers Fix_ForceAnnealing Fix_IndependentFragmentGrids Fix_ParseParticles Fix_ParseParticles_split_forward_backward_Actions Fix_PopActions Fix_QtFragmentList_sorted_selection Fix_Restrictedkeyset_FragmentMolecule Fix_StatusMsg Fix_StepWorldTime_single_argument Fix_Verbose_Codepatterns Fix_fitting_potentials Fixes ForceAnnealing_goodresults ForceAnnealing_oldresults ForceAnnealing_tocheck ForceAnnealing_with_BondGraph ForceAnnealing_with_BondGraph_continued ForceAnnealing_with_BondGraph_continued_betteresults ForceAnnealing_with_BondGraph_contraction-expansion FragmentAction_writes_AtomFragments FragmentMolecule_checks_bonddegrees GeometryObjects Gui_Fixes Gui_displays_atomic_force_velocity ImplicitCharges IndependentFragmentGrids IndependentFragmentGrids_IndividualZeroInstances IndependentFragmentGrids_IntegrationTest IndependentFragmentGrids_Sole_NN_Calculation JobMarket_RobustOnKillsSegFaults JobMarket_StableWorkerPool JobMarket_unresolvable_hostname_fix MoreRobust_FragmentAutomation ODR_violation_mpqc_open PartialCharges_OrthogonalSummation PdbParser_setsAtomName PythonUI_with_named_parameters QtGui_reactivate_TimeChanged_changes Recreated_GuiChecks Rewrite_FitPartialCharges RotateToPrincipalAxisSystem_UndoRedo SaturateAtoms_findBestMatching SaturateAtoms_singleDegree StoppableMakroAction Subpackage_CodePatterns Subpackage_JobMarket Subpackage_LinearAlgebra Subpackage_levmar Subpackage_mpqc_open Subpackage_vmg Switchable_LogView ThirdParty_MPQC_rebuilt_buildsystem TrajectoryDependenant_MaxOrder TremoloParser_IncreasedPrecision TremoloParser_MultipleTimesteps TremoloParser_setsAtomName Ubuntu_1604_changes stable
Last change on this file since e2925fd was 6ff62c, checked in by Frederik Heber <heber@…>, 12 years ago

Added DoValenceOnly has new option to FragmentationAutomationAction.

  • this carries over to MPQCData, MPQCJob, MPQCFragmentController, and VMGFragmentController, that need to pass on the option.
  • Changes to MPQCData have been caught by increasing serialization version.
  • TESTFIX: Redid files for regression test AnalyseFragmentResults.
  • Property mode set to 100644
File size: 3.0 KB
Line 
1/*
2 * Project: MoleCuilder
3 * Description: creates and alters molecular systems
4 * Copyright (C) 2012 University of Bonn. All rights reserved.
5 *
6 *
7 * This file is part of MoleCuilder.
8 *
9 * MoleCuilder is free software: you can redistribute it and/or modify
10 * it under the terms of the GNU General Public License as published by
11 * the Free Software Foundation, either version 2 of the License, or
12 * (at your option) any later version.
13 *
14 * MoleCuilder is distributed in the hope that it will be useful,
15 * but WITHOUT ANY WARRANTY; without even the implied warranty of
16 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
17 * GNU General Public License for more details.
18 *
19 * You should have received a copy of the GNU General Public License
20 * along with MoleCuilder. If not, see <http://www.gnu.org/licenses/>.
21 */
22
23/*
24 * MPQCCommandJob_MPQCData.cpp
25 *
26 * Created on: Feb 08, 2012
27 * Author: heber
28 */
29
30// include config.h
31#ifdef HAVE_CONFIG_H
32#include <config.h>
33#endif
34
35#include "CodePatterns/MemDebug.hpp"
36
37#include "MPQCData.hpp"
38
39#include <iostream>
40#include <limits>
41
42#include "CodePatterns/Log.hpp"
43#include "LinearAlgebra/defs.hpp"
44
45MPQCData::MPQCData(const SamplingGridProperties &_props) :
46 DoLongrange(DontSampleDensity),
47 DoValenceOnly(DoSampleValenceOnly),
48 sampled_grid(_props)
49{}
50
51MPQCData::MPQCData() :
52 DoLongrange(DontSampleDensity),
53 DoValenceOnly(DoValenceOnly)
54{}
55
56MPQCData::energy_t::energy_t() :
57 total(0.),
58 nuclear_repulsion(0.),
59 electron_coulomb(0.),
60 electron_exchange(0.),
61 correlation(0.),
62 overlap(0.),
63 kinetic(0.),
64 hcore(0.)
65{}
66
67MPQCData::times_t::times_t() :
68 total_walltime(0.),
69 total_cputime(0.),
70 total_flops(0.),
71 gather_walltime(0.),
72 gather_cputime(0.),
73 gather_flops(0.)
74{}
75
76/** Comparator for class MPQCData.
77 *
78 */
79bool MPQCData::operator==(const MPQCData &other) const
80{
81 if (fabs(energies.total - other.energies.total) > std::numeric_limits<double>::epsilon()) {
82 LOG(1, "INFO: Energy's in MPQCData differ: "
83 << energies.total << " != " << other.energies.total << ".");
84 return false;
85 }
86 if (forces.size() != other.forces.size()) {
87 LOG(1, "INFO: Forces's in MPQCData differ in size: "
88 << forces.size() << " != " << other.forces.size() << ".");
89 return false;
90 }
91 for (size_t i = 0; i < forces.size(); ++i)
92 for (size_t index = 0; index < NDIM; ++index)
93 if (fabs(forces[i][index] - other.forces[i][index]) > std::numeric_limits<double>::epsilon()) {
94 LOG(1, "INFO: " << index << "th component of force of particle "
95 << i << " in MPQCData differ: " << forces[i][index]
96 << " != " << other.forces[i][index] << ".");
97 return false;
98 }
99 return true;
100}
101
102std::ostream & operator<<(std::ostream &ost, const MPQCData &data)
103{
104 ost << "Energy: " << data.energies.total << "\t";
105 ost << "Forces: " << data.forces << "\t";
106 ost << "Times: " << data.times.total_walltime << ", "
107 << data.times.total_cputime << ", "
108 << data.times.total_flops;
109 return ost;
110}
Note: See TracBrowser for help on using the repository browser.