/*
* Project: MoleCuilder
* Description: creates and alters molecular systems
* Copyright (C) 2012 University of Bonn. All rights reserved.
* Copyright (C) 2013 Frederik Heber. All rights reserved.
*
*
* This file is part of MoleCuilder.
*
* MoleCuilder is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 2 of the License, or
* (at your option) any later version.
*
* MoleCuilder is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with MoleCuilder. If not, see .
*/
/*
* MPQCCommandJob_MPQCData.cpp
*
* Created on: Feb 08, 2012
* Author: heber
*/
// include config.h
#ifdef HAVE_CONFIG_H
#include
#endif
#include "CodePatterns/MemDebug.hpp"
#include "MPQCData.hpp"
#include
#include
#include "CodePatterns/Log.hpp"
#include "LinearAlgebra/defs.hpp"
MPQCData::MPQCData(const SamplingGridProperties &_props) :
DoLongrange(DontSampleDensity),
DoValenceOnly(DoSampleValenceOnly),
sampled_grid(_props),
accuracy(0.),
desired_accuracy(0.)
{}
MPQCData::MPQCData() :
DoLongrange(DontSampleDensity),
DoValenceOnly(DoSampleValenceOnly),
accuracy(0.),
desired_accuracy(0.)
{}
MPQCData::energy_t::energy_t() :
total(0.),
nuclear_repulsion(0.),
electron_coulomb(0.),
electron_exchange(0.),
correlation(0.),
overlap(0.),
kinetic(0.),
hcore(0.)
{}
MPQCData::times_t::times_t() :
total_walltime(0.),
total_cputime(0.),
total_flops(0.),
gather_walltime(0.),
gather_cputime(0.),
gather_flops(0.)
{}
/** Comparator for class MPQCData.
*
*/
bool MPQCData::operator==(const MPQCData &other) const
{
if (fabs(energies.total - other.energies.total) > std::numeric_limits::epsilon()) {
LOG(1, "INFO: Energy's in MPQCData differ: "
<< energies.total << " != " << other.energies.total << ".");
return false;
}
if (forces.size() != other.forces.size()) {
LOG(1, "INFO: Forces's in MPQCData differ in size: "
<< forces.size() << " != " << other.forces.size() << ".");
return false;
}
for (size_t i = 0; i < forces.size(); ++i)
for (size_t index = 0; index < NDIM; ++index)
if (fabs(forces[i][index] - other.forces[i][index]) > std::numeric_limits::epsilon()) {
LOG(1, "INFO: " << index << "th component of force of particle "
<< i << " in MPQCData differ: " << forces[i][index]
<< " != " << other.forces[i][index] << ".");
return false;
}
return true;
}
void MPQCData::assignWithDownsampledGrid(
MPQCData &instance,
const MPQCData &other)
{
if (&instance != &other) {
instance.energies = other.energies;
instance.forces = other.forces;
instance.DoLongrange = other.DoLongrange;
instance.DoValenceOnly = other.DoValenceOnly;
/** We need to return from the local grid of the fragment to the global
* grid and change the level in such a way that the gridpoints remain exactly
* the same.
*/
SamplingGridProperties domain(instance.sampled_grid);
//!> we need to downsample by the difference in levels and by the smaller grid size
const double surplus_level = instance.sampled_grid.getSurplusLevel(other.sampled_grid);
ASSERT( fabs(surplus_level - round(surplus_level)) < std::numeric_limits::epsilon()*1e4,
"MPQCData::assignWithDownsampledGrid() - surplus level is not integer: "
+toString(surplus_level));
const int downsample_level =
(other.sampled_grid.level - instance.sampled_grid.level) + round(surplus_level);
// downsample the stored grid values to the coarser grid
SamplingGrid::downsample(
instance.sampled_grid, other.sampled_grid,
other.sampled_grid.level - downsample_level);
// then we can simply take over
#ifndef NDEBUG
const size_t window_gridpoints = instance.sampled_grid.getWindowGridPoints();
#endif
static_cast(instance.sampled_grid) = domain;
ASSERT(instance.sampled_grid.getWindowGridPoints() == window_gridpoints,
"MPQCData::assignWithDownsampledGrid() - number of window gridpoints is "
+toString(instance.sampled_grid.getWindowGridPoints())+" and was "+toString(window_gridpoints));
instance.positions = other.positions;
instance.atomicnumbers = other.atomicnumbers;
instance.charges = other.charges;
instance.times = other.times;
instance.accuracy = other.accuracy;
instance.desired_accuracy = other.desired_accuracy;
}
}
std::ostream & operator<<(std::ostream &ost, const MPQCData &data)
{
ost << "Energy: " << data.energies.total << "\t";
ost << "Forces: " << data.forces << "\t";
ost << "Times: " << data.times.total_walltime << ", "
<< data.times.total_cputime << ", "
<< data.times.total_flops << ", ";
ost << "Accuracy: " << data.accuracy << "\t";
ost << "Desired accuracy: " << data.desired_accuracy << "\t";
return ost;
}